Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSQ23_RS15760 Genome accession   NZ_CP150179
Coordinates   2920402..2920893 (-) Length   163 a.a.
NCBI ID   WP_339172129.1    Uniprot ID   -
Organism   Anoxybacillus sp. FSL W8-1294     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2915402..2925893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ23_RS15740 (NSQ23_15740) rplI 2916697..2917146 (-) 450 WP_004893223.1 50S ribosomal protein L9 -
  NSQ23_RS15745 (NSQ23_15745) - 2917143..2919116 (-) 1974 WP_339172126.1 DHH family phosphoesterase -
  NSQ23_RS15750 (NSQ23_15750) - 2919138..2920070 (-) 933 WP_339172128.1 YybS family protein -
  NSQ23_RS15755 (NSQ23_15755) rpsR 2920132..2920368 (-) 237 WP_077429095.1 30S ribosomal protein S18 -
  NSQ23_RS15760 (NSQ23_15760) ssbA 2920402..2920893 (-) 492 WP_339172129.1 single-stranded DNA-binding protein Machinery gene
  NSQ23_RS15765 (NSQ23_15765) rpsF 2920920..2921207 (-) 288 WP_009361077.1 30S ribosomal protein S6 -
  NSQ23_RS15770 (NSQ23_15770) ychF 2921312..2922412 (-) 1101 WP_004893236.1 redox-regulated ATPase YchF -
  NSQ23_RS15775 (NSQ23_15775) - 2922433..2922630 (-) 198 WP_035019045.1 DUF951 domain-containing protein -
  NSQ23_RS15780 (NSQ23_15780) - 2922651..2923526 (-) 876 WP_339172133.1 mechanosensitive ion channel family protein -
  NSQ23_RS15785 (NSQ23_15785) yyaC 2923709..2924299 (+) 591 WP_339172135.1 spore protease YyaC -
  NSQ23_RS15790 (NSQ23_15790) - 2924288..2924995 (-) 708 WP_064221294.1 DUF554 domain-containing protein -
  NSQ23_RS15795 (NSQ23_15795) - 2925011..2925874 (-) 864 WP_004893254.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18167.04 Da        Isoelectric Point: 4.6708

>NTDB_id=965203 NSQ23_RS15760 WP_339172129.1 2920402..2920893(-) (ssbA) [Anoxybacillus sp. FSL W8-1294]
MINRVILVGRLTKDPELRYTPNGVAVATFTLAVNRTYTNQQGERETDFINCIVWRRQAENVANYLKKGSLAGIEGRIQTR
SYENQEGKRVYVTEVVADSVQFLEPRGGGEQRGMASGSYGEPFPFGSNQNPNQGRNSGFSRIDDDPFANDGQPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=965203 NSQ23_RS15760 WP_339172129.1 2920402..2920893(-) (ssbA) [Anoxybacillus sp. FSL W8-1294]
ATGATTAATCGCGTAATTCTCGTCGGAAGACTGACGAAAGATCCGGAATTACGCTATACTCCAAATGGAGTTGCTGTTGC
CACGTTTACGCTAGCGGTGAATCGAACGTATACGAACCAACAAGGTGAACGTGAAACAGATTTTATTAACTGTATCGTTT
GGCGCCGACAAGCTGAAAATGTGGCGAACTATTTGAAAAAAGGTAGTTTAGCTGGAATAGAAGGTCGAATTCAAACGAGA
TCATATGAAAACCAAGAAGGAAAACGAGTGTACGTGACAGAGGTTGTCGCCGATAGCGTGCAGTTTTTAGAGCCGCGAGG
TGGCGGTGAGCAACGTGGCATGGCATCAGGCAGCTATGGCGAGCCGTTTCCATTTGGATCAAATCAGAACCCGAACCAAG
GACGTAACAGCGGATTTAGTCGAATTGATGATGATCCATTTGCGAACGATGGACAACCAATCGACATATCGGATGATGAT
TTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.54

100

0.742
  ssb Latilactobacillus sakei subsp. sakei 23K

56.571

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

65.031

0.417
  ssb Vibrio cholerae strain A1552

36.313

100

0.399
  ssb Glaesserella parasuis strain SC1401

35.593

100

0.387
  ssb Neisseria meningitidis MC58

35.593

100

0.387
  ssb Neisseria gonorrhoeae MS11

35.593

100

0.387

Multiple sequence alignment