Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   NSU16_RS17055 Genome accession   NZ_CP150176
Coordinates   3328806..3329402 (+) Length   198 a.a.
NCBI ID   WP_003326811.1    Uniprot ID   A0AAP3CU21
Organism   Bacillus sp. FSL K6-1003     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3323806..3334402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS17025 (NSU16_17025) aspP 3324766..3326328 (+) 1563 WP_229149345.1 aspartate/proton symporter AspP -
  NSU16_RS17030 (NSU16_17030) - 3326425..3327009 (+) 585 WP_339191602.1 TetR family transcriptional regulator -
  NSU16_RS17035 (NSU16_17035) - 3327087..3327422 (+) 336 WP_268449058.1 multidrug efflux SMR transporter -
  NSU16_RS17040 (NSU16_17040) - 3327422..3327736 (+) 315 WP_268449056.1 multidrug efflux SMR transporter -
  NSU16_RS17045 (NSU16_17045) - 3327781..3328296 (-) 516 WP_339191605.1 DUF3231 family protein -
  NSU16_RS17055 (NSU16_17055) clpP 3328806..3329402 (+) 597 WP_003326811.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  NSU16_RS17060 (NSU16_17060) pgmB 3329519..3330199 (-) 681 WP_268472079.1 beta-phosphoglucomutase -
  NSU16_RS17065 (NSU16_17065) - 3330196..3331881 (-) 1686 WP_326196696.1 alpha-glucosidase -
  NSU16_RS17070 (NSU16_17070) - 3331874..3334147 (-) 2274 WP_339191606.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21877.15 Da        Isoelectric Point: 4.7114

>NTDB_id=965031 NSU16_RS17055 WP_003326811.1 3328806..3329402(+) (clpP) [Bacillus sp. FSL K6-1003]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEAMEYGLIDKVLTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=965031 NSU16_RS17055 WP_003326811.1 3328806..3329402(+) (clpP) [Bacillus sp. FSL K6-1003]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTTTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCAG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATTTATGATACC
ATGCAGTTTATTAAGCCAAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGTGCGTTCCTGCTTGCTGCCGG
AGAAAAAGGCAAACGCTATGCGCTTCCTAACAGTGAAGTTATGATTCACCAGCCACTTGGCGGAGCGCAAGGTCAGGCAA
CAGAAATTGAAATTGCTGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTGCTTGCTGAACGCACAGGCCAG
CCGCTTGAAGTCATTGAGCGCGATACTGACCGCGATAACTTCAAATCAGCCGAAGAAGCAATGGAATACGGCTTGATTGA
TAAGGTTTTGACACGCAACACAGAAGAGCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

95.455

100

0.955
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.586

96.465

0.662
  clpP Streptococcus thermophilus LMG 18311

58.031

97.475

0.566
  clpP Streptococcus thermophilus LMD-9

58.031

97.475

0.566
  clpP Streptococcus pneumoniae Rx1

56.701

97.98

0.556
  clpP Streptococcus pneumoniae D39

56.701

97.98

0.556
  clpP Streptococcus pneumoniae R6

56.701

97.98

0.556
  clpP Streptococcus pneumoniae TIGR4

56.701

97.98

0.556
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.124

97.98

0.53
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53

Multiple sequence alignment