Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   NYE79_RS01055 Genome accession   NZ_CP150168
Coordinates   184216..184518 (+) Length   100 a.a.
NCBI ID   WP_200370534.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 179216..189518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS01025 (NYE79_01025) nagA 179890..181041 (+) 1152 WP_216728918.1 N-acetylglucosamine-6-phosphate deacetylase -
  NYE79_RS01030 (NYE79_01030) - 181196..181561 (+) 366 WP_216728919.1 DUF1033 family protein -
  NYE79_RS01035 (NYE79_01035) comGA/cglA/cilD 181626..182567 (+) 942 WP_216728920.1 competence type IV pilus ATPase ComGA Machinery gene
  NYE79_RS01040 (NYE79_01040) comGB/cglB 182515..183531 (+) 1017 WP_216728921.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYE79_RS01045 (NYE79_01045) comGC/cglC 183533..183856 (+) 324 WP_000735800.1 competence type IV pilus major pilin ComGC Machinery gene
  NYE79_RS01050 (NYE79_01050) comGD/cglD 183819..184253 (+) 435 WP_216728922.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE79_RS01055 (NYE79_01055) comGE/cglE 184216..184518 (+) 303 WP_200370534.1 competence type IV pilus minor pilin ComGE Machinery gene
  NYE79_RS01060 (NYE79_01060) comGF/cglF 184481..184942 (+) 462 WP_070568120.1 competence type IV pilus minor pilin ComGF Machinery gene
  NYE79_RS01065 (NYE79_01065) comGG/cglG 184920..185333 (+) 414 WP_070568123.1 competence type IV pilus minor pilin ComGG Machinery gene
  NYE79_RS01070 (NYE79_01070) - 185366..185956 (+) 591 WP_216728923.1 class I SAM-dependent methyltransferase -
  NYE79_RS01075 (NYE79_01075) comYH 186015..186968 (+) 954 WP_216728924.1 class I SAM-dependent methyltransferase Machinery gene
  NYE79_RS01080 (NYE79_01080) - 187019..188209 (+) 1191 WP_000167790.1 acetate kinase -
  NYE79_RS01085 (NYE79_01085) rnpA 188359..188730 (+) 372 WP_000748120.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11168.13 Da        Isoelectric Point: 7.0157

>NTDB_id=964582 NYE79_RS01055 WP_200370534.1 184216..184518(+) (comGE/cglE) [Streptococcus sp. FSL W8-0197]
MEKLNALRKLKIKAVILLEAVVALAIFASIATLLLGQIQKNRQEEAEILQKEEVLRVAKMALQTGQNQVNINGVEIQVFS
SEKGLEVYHGSEKLLDLKEQ

Nucleotide


Download         Length: 303 bp        

>NTDB_id=964582 NYE79_RS01055 WP_200370534.1 184216..184518(+) (comGE/cglE) [Streptococcus sp. FSL W8-0197]
ATGGAAAAATTAAACGCATTAAGGAAACTAAAAATTAAGGCAGTGATCTTACTAGAAGCAGTAGTAGCGCTAGCCATATT
TGCCAGTATTGCAACCCTCCTCTTGGGACAAATCCAGAAAAATAGGCAGGAAGAGGCAGAAATCTTGCAAAAGGAAGAAG
TCTTGCGTGTAGCGAAGATGGCTCTGCAGACAGGTCAAAATCAGGTAAACATAAACGGAGTGGAGATTCAGGTGTTTTCT
AGTGAAAAGGGATTGGAGGTCTACCATGGTTCAGAGAAGTTGCTGGATCTTAAAGAGCAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(16-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus mitis NCTC 12261

92.929

99

0.92
  comGE/cglE Streptococcus pneumoniae Rx1

92.929

99

0.92
  comGE/cglE Streptococcus pneumoniae D39

92.929

99

0.92
  comGE/cglE Streptococcus pneumoniae R6

92.929

99

0.92
  comGE/cglE Streptococcus pneumoniae TIGR4

92.929

99

0.92
  comGE/cglE Streptococcus mitis SK321

91.919

99

0.91
  comYE Streptococcus mutans UA140

42.391

92

0.39
  comYE Streptococcus mutans UA159

42.391

92

0.39

Multiple sequence alignment