Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | NYE79_RS01075 | Genome accession | NZ_CP150168 |
| Coordinates | 186015..186968 (+) | Length | 317 a.a. |
| NCBI ID | WP_216728924.1 | Uniprot ID | - |
| Organism | Streptococcus sp. FSL W8-0197 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 181015..191968
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYE79_RS01030 (NYE79_01030) | - | 181196..181561 (+) | 366 | WP_216728919.1 | DUF1033 family protein | - |
| NYE79_RS01035 (NYE79_01035) | comGA/cglA/cilD | 181626..182567 (+) | 942 | WP_216728920.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| NYE79_RS01040 (NYE79_01040) | comGB/cglB | 182515..183531 (+) | 1017 | WP_216728921.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| NYE79_RS01045 (NYE79_01045) | comGC/cglC | 183533..183856 (+) | 324 | WP_000735800.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| NYE79_RS01050 (NYE79_01050) | comGD/cglD | 183819..184253 (+) | 435 | WP_216728922.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| NYE79_RS01055 (NYE79_01055) | comGE/cglE | 184216..184518 (+) | 303 | WP_200370534.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| NYE79_RS01060 (NYE79_01060) | comGF/cglF | 184481..184942 (+) | 462 | WP_070568120.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| NYE79_RS01065 (NYE79_01065) | comGG/cglG | 184920..185333 (+) | 414 | WP_070568123.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| NYE79_RS01070 (NYE79_01070) | - | 185366..185956 (+) | 591 | WP_216728923.1 | class I SAM-dependent methyltransferase | - |
| NYE79_RS01075 (NYE79_01075) | comYH | 186015..186968 (+) | 954 | WP_216728924.1 | class I SAM-dependent methyltransferase | Machinery gene |
| NYE79_RS01080 (NYE79_01080) | - | 187019..188209 (+) | 1191 | WP_000167790.1 | acetate kinase | - |
| NYE79_RS01085 (NYE79_01085) | rnpA | 188359..188730 (+) | 372 | WP_000748120.1 | ribonuclease P protein component | - |
| NYE79_RS01090 (NYE79_01090) | - | 188705..189532 (+) | 828 | WP_196755722.1 | membrane protein insertase YidC | - |
| NYE79_RS01095 (NYE79_01095) | jag | 189547..190533 (+) | 987 | WP_061587790.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| NYE79_RS01100 (NYE79_01100) | - | 190589..191212 (+) | 624 | WP_061587789.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35586.66 Da Isoelectric Point: 4.2393
>NTDB_id=964585 NYE79_RS01075 WP_216728924.1 186015..186968(+) (comYH) [Streptococcus sp. FSL W8-0197]
MDFEKIEQAYTYLLENVQVIQSDLVTNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDVISLLLVLVVEELLHKEEISILEIGSGMGILGATFLTSLSKKVDYLGVEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
MDFEKIEQAYTYLLENVQVIQSDLVTNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDVISLLLVLVVEELLHKEEISILEIGSGMGILGATFLTSLSKKVDYLGVEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=964585 NYE79_RS01075 WP_216728924.1 186015..186968(+) (comYH) [Streptococcus sp. FSL W8-0197]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGTGACCAA
CTTTTATGATGCCTTAGTAGAGCAAAATAGTATCTACCTAGATGGCGAGACCGAACTAGAACAGGTCAAAGAGAACAATC
AAGCCCTTAAACGCTTAGCACTTCGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAACCTTTACAGGCCAATCACCAGTTTACACCGGATGTCATTTCCCTCCTCTTGGTACTTGTTGTAGAAGAGTTGCTTCA
TAAAGAGGAAATTAGCATCCTCGAAATAGGCTCTGGTATGGGCATTTTGGGGGCTACTTTCTTGACTTCTCTCTCTAAAA
AAGTGGATTACTTGGGAGTCGAAGTGGATGATTTGCTAATTGATCTGGCGGCTAGTATGGCAGATGTGATCGGTTTGCAG
GCAGGATTTGTCCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCACGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCAATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCCTTTGTCTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTTCTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGTGACCAA
CTTTTATGATGCCTTAGTAGAGCAAAATAGTATCTACCTAGATGGCGAGACCGAACTAGAACAGGTCAAAGAGAACAATC
AAGCCCTTAAACGCTTAGCACTTCGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAACCTTTACAGGCCAATCACCAGTTTACACCGGATGTCATTTCCCTCCTCTTGGTACTTGTTGTAGAAGAGTTGCTTCA
TAAAGAGGAAATTAGCATCCTCGAAATAGGCTCTGGTATGGGCATTTTGGGGGCTACTTTCTTGACTTCTCTCTCTAAAA
AAGTGGATTACTTGGGAGTCGAAGTGGATGATTTGCTAATTGATCTGGCGGCTAGTATGGCAGATGTGATCGGTTTGCAG
GCAGGATTTGTCCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCACGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCAATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCCTTTGTCTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTTCTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
58.521 |
98.107 |
0.574 |
| comYH | Streptococcus mutans UA159 |
58.199 |
98.107 |
0.571 |