Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACJEH6_RS07675 Genome accession   NZ_CP174239
Coordinates   1683600..1684820 (-) Length   406 a.a.
NCBI ID   WP_011215549.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF586     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1678600..1689820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEH6_RS07650 (ACJEH6_07650) - 1679351..1680166 (-) 816 WP_011215545.1 pyruvate, water dikinase regulatory protein -
  ACJEH6_RS07655 (ACJEH6_07655) - 1680300..1680755 (+) 456 WP_011215546.1 hypothetical protein -
  ACJEH6_RS07660 (ACJEH6_07660) - 1680771..1681364 (+) 594 WP_011213808.1 hypothetical protein -
  ACJEH6_RS07665 (ACJEH6_07665) - 1681472..1682677 (+) 1206 WP_011215547.1 cyclic nucleotide-binding domain-containing protein -
  ACJEH6_RS07670 (ACJEH6_07670) pilD 1682691..1683554 (-) 864 WP_011215548.1 A24 family peptidase Machinery gene
  ACJEH6_RS07675 (ACJEH6_07675) pilC 1683600..1684820 (-) 1221 WP_011215549.1 type II secretion system F family protein Machinery gene
  ACJEH6_RS07680 (ACJEH6_07680) pilB 1684826..1686550 (-) 1725 WP_011215550.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACJEH6_RS07685 (ACJEH6_07685) - 1686809..1687552 (+) 744 WP_011215551.1 methyltransferase domain-containing protein -
  ACJEH6_RS07690 (ACJEH6_07690) - 1687735..1688061 (+) 327 WP_011213802.1 DUF1820 family protein -
  ACJEH6_RS07695 (ACJEH6_07695) - 1688104..1688673 (+) 570 WP_011215552.1 hypoxanthine-guanine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44693.84 Da        Isoelectric Point: 9.6052

>NTDB_id=964135 ACJEH6_RS07675 WP_011215549.1 1683600..1684820(-) (pilC) [Legionella pneumophila strain SPF586]
MDKNSPPLLTFHYQGINKAGQKMEGDIQARSLAIAKADLRKQGIVTNKVVKKRKPLFDRKNKKITQADITVFSRQLATMI
ESGIPLVQAFDIVAKGQSNKRLKDLIETIKHDIETGLTLAESLIKHPLYFNELFCNLVDAGEKSGSLDIMLDKVATYKEK
IEIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEFMQAYWYIIFGALGGVVYSF
FYAKNHSLEFAQTIDRVMLKFPVIGPILEKAAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATG
QQMFTAMENTHLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSILGILVGGLVVAMYLPIF
KLGSAV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=964135 ACJEH6_RS07675 WP_011215549.1 1683600..1684820(-) (pilC) [Legionella pneumophila strain SPF586]
ATGGATAAAAATAGCCCACCCCTATTAACCTTTCATTATCAAGGCATTAATAAAGCCGGTCAAAAAATGGAGGGTGATAT
TCAAGCCAGAAGCTTGGCAATAGCTAAAGCTGATTTGCGTAAGCAGGGGATTGTTACCAATAAAGTAGTAAAAAAAAGAA
AACCTTTGTTTGATAGAAAAAATAAAAAAATCACACAAGCAGATATTACTGTATTTAGTCGCCAATTAGCGACGATGATC
GAGTCAGGAATACCATTAGTGCAAGCATTTGATATTGTTGCCAAAGGACAAAGCAATAAAAGACTTAAAGACTTAATAGA
AACAATTAAGCACGATATCGAAACGGGGCTAACGCTGGCAGAATCCTTAATTAAACATCCACTCTATTTTAATGAATTAT
TTTGTAATCTTGTCGATGCAGGTGAAAAATCAGGCTCATTAGATATCATGCTTGACAAGGTTGCAACGTATAAAGAAAAA
ATTGAAATCATAAAAAAGAAAATAAAAAAAGCTCTCACTTACCCAATTGCTGTTATGGTTGTCGCACTTTTGGTTACTGC
GGGATTATTAATCTATGTGGTGCCTCAATTTGAATCATTGTTTAAAGGATTTGGAGCTGATTTGCCAGCGATGACTAGAG
CTGTGATCACTATGTCTGAATTTATGCAGGCTTATTGGTATATTATTTTTGGAGCTTTGGGCGGGGTTGTCTATAGCTTT
TTTTATGCTAAAAATCATTCTTTGGAGTTTGCGCAAACCATTGACAGAGTGATGCTAAAATTCCCTGTAATTGGTCCTAT
TTTAGAGAAAGCAGCAATTGCTAGATTCGCGAGGACATTATCCATTACTTTTGCTGCTGGATTACCCCTGGTTGAAGCAT
TGAAATCTGTAGCTGGAGCGACCGGGAATATTATTTATGCCAAGGCGACTGATAAAATCAGAGAAGAAGTTGCAACAGGA
CAGCAAATGTTTACTGCTATGGAAAATACTCATTTATTTCCAAATATGGTAATTCAAATGGTAGCAATTGGTGAGGAATC
AGGTGCCCTTGAAAAAATGTTAAGCAAAGTAGCTGATTTTTATGAGGAAGAAGTAAATAATGCTGTAGATGCCCTGAGTA
GTTTATTGGAGCCGATAATTATGTCAATATTAGGTATACTGGTTGGGGGATTGGTGGTGGCTATGTATTTACCTATTTTC
AAACTGGGTTCTGCTGTTTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

99.507

100

0.995
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.507

0.539
  pilC Acinetobacter baumannii D1279779

53.58

99.754

0.534
  pilC Acinetobacter baylyi ADP1

52.84

99.754

0.527
  pilG Neisseria meningitidis 44/76-A

45.088

97.783

0.441
  pilG Neisseria gonorrhoeae MS11

44.836

97.783

0.438
  pilC Vibrio cholerae strain A1552

42

98.522

0.414
  pilC Vibrio campbellii strain DS40M4

38.916

100

0.389