Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   WKW49_RS15735 Genome accession   NZ_CP149819
Coordinates   3951219..3953402 (-) Length   727 a.a.
NCBI ID   WP_019603506.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain SR02026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3946219..3958402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW49_RS15720 (WKW49_15720) - 3947980..3949443 (-) 1464 WP_339074241.1 AAA family ATPase -
  WKW49_RS15725 (WKW49_15725) aroB 3949544..3950629 (-) 1086 WP_339074242.1 3-dehydroquinate synthase -
  WKW49_RS15730 (WKW49_15730) aroK 3950707..3951216 (-) 510 WP_015817934.1 shikimate kinase AroK -
  WKW49_RS15735 (WKW49_15735) pilQ 3951219..3953402 (-) 2184 WP_019603506.1 type IV pilus secretin PilQ Machinery gene
  WKW49_RS15740 (WKW49_15740) - 3953407..3953937 (-) 531 WP_015819582.1 pilus assembly protein PilP -
  WKW49_RS15745 (WKW49_15745) - 3953937..3954560 (-) 624 WP_015818615.1 type 4a pilus biogenesis protein PilO -
  WKW49_RS15750 (WKW49_15750) - 3954562..3955122 (-) 561 WP_015818174.1 PilN domain-containing protein -
  WKW49_RS15755 (WKW49_15755) pilM 3955124..3956137 (-) 1014 WP_339074244.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 78786.95 Da        Isoelectric Point: 4.3647

>NTDB_id=961719 WKW49_RS15735 WP_019603506.1 3951219..3953402(-) (pilQ) [Teredinibacter turnerae strain SR02026]
MLANKVRILLAVALLSMCNLAGASSLNDISFSELPGERAELRLKFGGAVVAPQSYTIDQPARIVLDFVDVDNALSQKKYN
MSVGEVASAVIVAGGGRTRMIVNLNKLVPFVSRVEGNELVLEVGEESTGIGYAPRSEVADLGVVEQSSPAEVSGASVIRN
IDFRRGETGEGKVIITLSNPNISIDVQENSKGITVRFVETKIPMEMRRKLDVVDFATPVSIVSSSMEGSTALMEIEASGD
YDYLAYQADNEYVLSVKPLTSQEIAEKKKAFAYTGERLSLNFQDIQVRSVLQLIADFTELNLVASDTVSGSITLRLENVP
WDQALDLVLKTKGLDKRQVGNVLMVAPAAEIAEREKQEIETKKQLQELAPLRTEYIRIRYANARELFNLFSDSSAGGEGG
GTGGGGAAGGSNERNSTGSILSERGQAIVDERTNSIILTDTEEKIDQFKQLIDRIDIPVRQVMIEARIVVANSDFRKELG
FRIAGDAVESSKSGSHIHEFTGSLDSVYADETSITGAFVDSDGDGTADRAHTFPQNSFVDLGVFNPTGSLAWNVISNNFM
IGMELSALQDSGFAEIVSQPKVITGDKQQASIQSGTSVPFQEESASGGTTISFKDVVLRLDVTPQITPDNRIIMDLEILQ
DSVTGYESGVPIIDITHLDTSVLVADGDTVVLGGIYATEQRKGQSKVPLLGDIPLLGRLFRYDISQEDKRELLIFITPRI
MNSDFVE

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=961719 WKW49_RS15735 WP_019603506.1 3951219..3953402(-) (pilQ) [Teredinibacter turnerae strain SR02026]
ATGTTAGCTAATAAAGTAAGAATTCTGCTCGCCGTTGCGCTGCTGTCGATGTGCAACCTGGCTGGAGCGAGCAGCTTGAA
TGATATTTCTTTTTCGGAGCTGCCCGGGGAGCGCGCAGAACTGAGACTTAAATTCGGTGGTGCTGTAGTAGCGCCACAAA
GTTACACCATCGATCAGCCTGCACGTATCGTGTTGGATTTTGTTGATGTGGACAATGCTCTGAGTCAGAAAAAATACAAC
ATGTCAGTGGGTGAAGTGGCCAGCGCAGTTATCGTTGCCGGTGGCGGCCGCACCCGAATGATCGTGAACCTGAATAAATT
AGTGCCATTTGTTTCTCGTGTTGAAGGCAATGAGCTGGTGTTGGAGGTTGGTGAGGAGTCAACTGGTATCGGCTATGCCC
CGCGCAGTGAAGTGGCGGATTTGGGGGTTGTTGAACAATCCAGCCCCGCCGAAGTTTCGGGGGCTTCAGTTATTCGCAAT
ATTGATTTTCGTCGCGGCGAGACGGGTGAGGGTAAGGTAATCATTACTTTATCTAATCCCAACATCAGTATTGATGTTCA
AGAAAACTCCAAGGGCATAACGGTGCGCTTTGTCGAAACCAAAATCCCAATGGAAATGCGACGCAAACTGGATGTGGTTG
ACTTTGCGACTCCGGTCAGCATCGTGTCTTCTTCGATGGAAGGCAGCACTGCACTCATGGAAATCGAAGCGTCCGGTGAC
TACGACTATCTGGCGTACCAGGCGGACAACGAGTACGTGCTCAGTGTAAAACCTTTAACCTCGCAAGAAATCGCCGAGAA
GAAAAAGGCCTTTGCTTACACTGGAGAACGCTTGTCGCTCAATTTCCAAGACATTCAGGTCCGCTCTGTCCTGCAGTTAA
TTGCAGACTTTACTGAGCTGAACCTGGTTGCCAGCGATACCGTCTCAGGCAGTATCACACTGCGGTTGGAGAACGTGCCC
TGGGATCAGGCGCTGGATCTGGTTCTGAAGACTAAAGGGCTGGACAAGCGCCAGGTAGGCAATGTGTTGATGGTTGCCCC
GGCCGCTGAAATCGCTGAACGTGAAAAGCAGGAAATCGAAACCAAGAAGCAACTACAGGAGCTGGCGCCACTGCGCACCG
AATATATTCGGATCCGTTACGCGAACGCCCGTGAACTGTTTAACCTGTTTTCCGATAGCAGTGCTGGTGGCGAAGGTGGT
GGCACCGGCGGTGGTGGTGCAGCAGGTGGTAGTAACGAGCGCAATTCGACCGGCAGCATCCTTTCCGAGCGCGGCCAGGC
GATTGTGGACGAGCGTACCAACTCTATTATTCTTACCGATACCGAAGAAAAAATTGATCAGTTCAAGCAATTGATCGACC
GTATTGACATACCTGTACGACAGGTAATGATCGAAGCCCGCATTGTGGTCGCGAATTCAGACTTCCGCAAAGAGCTGGGT
TTTAGAATTGCTGGCGATGCGGTGGAGTCAAGTAAGTCTGGTAGTCATATTCATGAATTTACCGGCTCGCTGGACAGTGT
TTATGCGGATGAAACCAGTATCACTGGTGCTTTCGTGGATTCTGACGGCGACGGTACCGCCGATCGGGCACACACCTTCC
CGCAAAACTCCTTTGTCGATCTTGGTGTGTTCAACCCGACAGGCTCTCTGGCGTGGAACGTGATCAGTAATAATTTCATG
ATCGGCATGGAGCTTTCTGCACTGCAGGATTCCGGTTTTGCAGAGATTGTTTCGCAACCCAAAGTGATCACTGGCGATAA
GCAGCAGGCGTCTATCCAGTCTGGTACATCGGTGCCCTTCCAAGAGGAGTCGGCAAGCGGCGGCACTACAATCTCATTTA
AAGATGTTGTGTTGCGTCTGGATGTTACCCCCCAGATTACGCCTGACAACCGTATTATTATGGATCTGGAAATTCTTCAG
GACTCTGTGACCGGTTATGAATCCGGTGTCCCAATTATCGATATTACCCACCTGGATACTTCAGTCCTGGTTGCGGATGG
CGATACGGTGGTTCTTGGGGGTATATACGCGACCGAGCAGCGTAAAGGGCAATCGAAAGTGCCTTTGCTCGGCGATATTC
CCTTGCTGGGCCGACTCTTCCGCTACGATATTAGTCAGGAAGATAAGCGCGAGCTGTTGATATTTATCACTCCTCGCATC
ATGAATTCAGATTTCGTCGAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(374-461)

Secretin and TonB N terminus short domain (STN)

(301-347)

AMIN domain (AMIN)

(40-122)

Bacterial type II and III secretion system protein (Secretin)

(567-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

46.846

100

0.48
  pilQ Acinetobacter baumannii strain A118

41.45

100

0.417
  pilQ Acinetobacter baumannii D1279779

41.45

100

0.417
  comQ Acinetobacter baylyi ADP1

41.477

96.836

0.402
  pilQ Legionella pneumophila strain ERS1305867

37.027

98.074

0.363
  pilQ Legionella pneumophila strain Lp02

37.027

98.074

0.363