Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   WKW49_RS15755 Genome accession   NZ_CP149819
Coordinates   3955124..3956137 (-) Length   337 a.a.
NCBI ID   WP_339074244.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain SR02026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3950124..3961137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW49_RS15730 (WKW49_15730) aroK 3950707..3951216 (-) 510 WP_015817934.1 shikimate kinase AroK -
  WKW49_RS15735 (WKW49_15735) pilQ 3951219..3953402 (-) 2184 WP_019603506.1 type IV pilus secretin PilQ Machinery gene
  WKW49_RS15740 (WKW49_15740) - 3953407..3953937 (-) 531 WP_015819582.1 pilus assembly protein PilP -
  WKW49_RS15745 (WKW49_15745) - 3953937..3954560 (-) 624 WP_015818615.1 type 4a pilus biogenesis protein PilO -
  WKW49_RS15750 (WKW49_15750) - 3954562..3955122 (-) 561 WP_015818174.1 PilN domain-containing protein -
  WKW49_RS15755 (WKW49_15755) pilM 3955124..3956137 (-) 1014 WP_339074244.1 pilus assembly protein PilM Machinery gene
  WKW49_RS15760 (WKW49_15760) - 3956345..3958909 (+) 2565 WP_339074246.1 penicillin-binding protein 1A -
  WKW49_RS15765 (WKW49_15765) rpmE 3959071..3959280 (+) 210 WP_015820904.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36319.13 Da        Isoelectric Point: 4.1933

>NTDB_id=961720 WKW49_RS15755 WP_339074244.1 3955124..3956137(-) (pilM) [Teredinibacter turnerae strain SR02026]
MSSTTVKLLEFSQQGNGYRVENYAVRALPPNAVVEKNINDVEAVAQAIKAVVQSSRTKVKDCAVAVPGSSVITKVIEMPG
DLGEEALESQISLEADQYIPYPLEEVAIDFDVLGPSAKNPDQVEVLLAACRRENVDIRASVLELADLRAKVVDVEAYTME
RAFGLIQEQLEDQEEQVVAILDIGATMTTLSVLVDGKTIYTREQLFGGKQLTEEIQRRYGLSAEEAGLAKKQGGLPDDYE
PEVLEPFKDAVVQQVTRSLQFFFSSSQYNDVDHIVLAGGVASLSGLAGLIEEKLGTSATVANPFANMSVSSRVNATALSN
DAPSLMIATGLAMRGFV

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=961720 WKW49_RS15755 WP_339074244.1 3955124..3956137(-) (pilM) [Teredinibacter turnerae strain SR02026]
GTGAGTTCGACAACAGTTAAGTTGTTAGAGTTCAGTCAGCAAGGTAACGGCTATAGGGTCGAGAACTATGCTGTGCGTGC
TCTGCCACCCAATGCAGTAGTCGAAAAAAACATCAATGACGTTGAGGCGGTCGCCCAGGCTATCAAAGCTGTGGTGCAAT
CGTCGCGGACCAAAGTCAAAGATTGTGCCGTTGCTGTTCCAGGTTCCTCTGTTATTACTAAAGTGATTGAAATGCCCGGA
GATTTGGGAGAAGAAGCGCTGGAGTCGCAAATCTCTCTCGAGGCAGATCAGTACATTCCTTACCCGCTCGAGGAAGTCGC
GATCGACTTTGACGTGTTGGGGCCTTCCGCTAAAAATCCAGACCAGGTCGAAGTATTGCTTGCAGCTTGTCGGCGTGAAA
ACGTTGATATACGAGCGTCTGTTCTTGAACTAGCTGACTTACGCGCCAAAGTGGTTGACGTGGAAGCCTACACCATGGAA
CGCGCGTTCGGGCTCATTCAGGAGCAGCTGGAGGATCAGGAAGAGCAGGTGGTGGCGATTTTAGATATTGGCGCCACTAT
GACCACCCTGAGTGTGTTGGTGGATGGCAAGACTATTTACACGCGCGAGCAGTTGTTTGGCGGTAAGCAGCTAACCGAAG
AAATTCAGCGCCGCTATGGTTTGTCCGCGGAAGAAGCGGGTCTGGCGAAAAAACAGGGCGGTTTGCCCGATGATTACGAG
CCGGAAGTGCTCGAGCCTTTTAAAGATGCCGTCGTTCAGCAGGTAACACGTTCGTTGCAATTCTTCTTCTCATCCAGCCA
ATACAACGATGTCGACCACATTGTTCTCGCTGGGGGGGTGGCTTCTCTCTCCGGCTTGGCCGGTTTAATTGAAGAAAAGC
TGGGCACATCTGCGACAGTCGCAAATCCGTTTGCGAATATGTCGGTTTCATCGCGGGTAAATGCAACCGCGCTTTCAAAC
GACGCGCCTTCGCTGATGATTGCAACGGGGCTGGCTATGAGGGGCTTTGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(1-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

56.548

99.703

0.564
  comM Acinetobacter nosocomialis M2

56.548

99.703

0.564
  comM Acinetobacter baylyi ADP1

54.464

99.703

0.543
  pilM Legionella pneumophila strain ERS1305867

46.269

99.407

0.46