Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   WKW51_RS01740 Genome accession   NZ_CP149800
Coordinates   368042..368515 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AB7276     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363042..373515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW51_RS01715 (WKW51_01715) - 363505..365610 (-) 2106 WP_001117590.1 HD domain-containing protein -
  WKW51_RS01720 (WKW51_01720) - 365650..365780 (-) 131 Protein_330 hypothetical protein -
  WKW51_RS01725 (WKW51_01725) rpoZ 365819..366097 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  WKW51_RS01730 (WKW51_01730) gmk 366170..366799 (-) 630 WP_000015937.1 guanylate kinase -
  WKW51_RS01735 (WKW51_01735) ispH 366922..367872 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  WKW51_RS01740 (WKW51_01740) fimU 368042..368515 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  WKW51_RS01745 (WKW51_01745) pilV 368509..369069 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  WKW51_RS01750 (WKW51_01750) pilW 369070..370071 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  WKW51_RS01755 (WKW51_01755) pilX 370068..370886 (+) 819 WP_000149373.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=961407 WKW51_RS01740 WP_001214065.1 368042..368515(+) (fimU) [Acinetobacter baumannii strain AB7276]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=961407 WKW51_RS01740 WP_001214065.1 368042..368515(+) (fimU) [Acinetobacter baumannii strain AB7276]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1