Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACIRXL_RS07605 Genome accession   NZ_CP173236
Coordinates   1535686..1536276 (+) Length   196 a.a.
NCBI ID   WP_017806897.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1530686..1541276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXL_RS07585 (ACIRXL_07585) - 1532342..1532692 (+) 351 WP_103854231.1 DUF305 domain-containing protein -
  ACIRXL_RS07590 (ACIRXL_07590) - 1532853..1533209 (+) 357 Protein_1455 DNA-processing protein DprA -
  ACIRXL_RS07595 (ACIRXL_07595) - 1533213..1533764 (-) 552 Protein_1456 BCCT family transporter -
  ACIRXL_RS07600 (ACIRXL_07600) tig 1534270..1535568 (+) 1299 WP_410680824.1 trigger factor -
  ACIRXL_RS07605 (ACIRXL_07605) clpP 1535686..1536276 (+) 591 WP_017806897.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACIRXL_RS07610 (ACIRXL_07610) clpX 1536280..1537536 (+) 1257 WP_410680823.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACIRXL_RS07615 (ACIRXL_07615) aspA 1537759..1539186 (+) 1428 WP_110479872.1 aspartate ammonia-lyase -
  ACIRXL_RS07620 (ACIRXL_07620) - 1539277..1541073 (-) 1797 WP_410680822.1 AMP-dependent synthetase/ligase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21613.88 Da        Isoelectric Point: 5.0640

>NTDB_id=957776 ACIRXL_RS07605 WP_017806897.1 1535686..1536276(+) (clpP) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
MALIPMVVEQTARGERSYDIYSRLLKERVIFLSGQVEDNMANLIVAQLLFLESENPDKDISIYINSPGGSVTAGMAIYDT
MQFIKPDVRTLCIGQACSMGAFLLAGGTPGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKIKQTLNEKLAFHTGQ
PLAKIENDTDRDNFMSAEEAKAYGLIDEVLIKRETE

Nucleotide


Download         Length: 591 bp        

>NTDB_id=957776 ACIRXL_RS07605 WP_017806897.1 1535686..1536276(+) (clpP) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
ATGGCTTTAATCCCTATGGTCGTTGAACAGACCGCAAGAGGCGAGCGTTCATATGACATTTATTCACGTTTATTAAAAGA
GCGTGTGATTTTTTTAAGTGGGCAGGTTGAAGACAATATGGCAAATTTGATCGTCGCACAACTGCTTTTTTTAGAATCGG
AAAATCCAGACAAAGATATTAGTATTTACATTAACTCTCCGGGAGGCTCGGTAACCGCGGGAATGGCGATTTATGACACA
ATGCAATTCATTAAGCCTGATGTGAGAACCCTTTGTATTGGACAGGCTTGTTCAATGGGAGCATTTTTACTCGCGGGTGG
CACACCGGGCAAACGTGCGGCATTACCAAATGCACGGGTGATGATTCACCAACCACTAGGGGGATTCCGTGGGCAGGCTT
CCGATATTCAAATTCACGCCCAAGAAATCTTAAAAATTAAGCAGACATTGAATGAAAAATTGGCATTCCACACAGGGCAG
CCTTTAGCGAAAATTGAAAACGATACTGATCGCGACAATTTTATGTCTGCCGAAGAAGCCAAAGCTTACGGCTTAATTGA
CGAAGTCCTAATTAAAAGAGAAACGGAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.041

98.98

0.673
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.368

96.939

0.653
  clpP Streptococcus thermophilus LMD-9

54.639

98.98

0.541
  clpP Streptococcus pyogenes JRS4

54.639

98.98

0.541
  clpP Streptococcus pyogenes MGAS315

54.639

98.98

0.541
  clpP Streptococcus thermophilus LMG 18311

54.639

98.98

0.541
  clpP Streptococcus pneumoniae R6

55.263

96.939

0.536
  clpP Streptococcus pneumoniae Rx1

55.263

96.939

0.536
  clpP Streptococcus pneumoniae D39

55.263

96.939

0.536
  clpP Streptococcus pneumoniae TIGR4

55.263

96.939

0.536
  clpP Streptococcus mutans UA159

53.333

99.49

0.531
  clpP Lactococcus lactis subsp. cremoris KW2

53.158

96.939

0.515
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.105

96.939

0.505