Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACIO08_RS04795 Genome accession   NZ_CP173233
Coordinates   1025417..1026517 (-) Length   366 a.a.
NCBI ID   WP_410679125.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1020417..1031517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS04780 (ACIO08_04780) glpQ 1021507..1022601 (+) 1095 WP_410679122.1 glycerophosphodiester phosphodiesterase -
  ACIO08_RS04785 (ACIO08_04785) pilA 1023163..1024656 (-) 1494 WP_410679123.1 signal recognition particle-docking protein FtsY Machinery gene
  ACIO08_RS04790 (ACIO08_04790) rsmD 1024812..1025420 (+) 609 WP_264245187.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACIO08_RS04795 (ACIO08_04795) dprA 1025417..1026517 (-) 1101 WP_410679125.1 DNA-processing protein DprA Machinery gene
  ACIO08_RS04800 (ACIO08_04800) pilF/pilF2 1026662..1027204 (-) 543 WP_110479719.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ACIO08_RS04805 (ACIO08_04805) - 1027238..1028407 (-) 1170 WP_410679126.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  ACIO08_RS04810 (ACIO08_04810) - 1028714..1030285 (-) 1572 WP_410679127.1 tetratricopeptide repeat protein -
  ACIO08_RS04815 (ACIO08_04815) - 1030315..1031349 (-) 1035 WP_410679128.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 40922.76 Da        Isoelectric Point: 5.0734

>NTDB_id=957657 ACIO08_RS04795 WP_410679125.1 1025417..1026517(-) (dprA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MITNEMLLRLLQIPKLGANTIQKILGEISFTQLLDYDEYAFKQIGWSEKQIQRWFYPERKFIDPALQWAESAGNFLLNFT
DEDYPYLLKQIPSAPPILFLQGNLTALSQPQIAIVGSRYCSNYGEYWAKYFASELSLAGFAITSGLALGIDGFCHQAVVD
IQGQTLAVLGSGLDKVYPAKHRRLAEQIIEHNGTLISEFLPAQPPVAENFPRRNRIISGLSLGTLIIEATERSGSLITAR
YALEQNREVFALPGNIQNGFSEGCHKLIKQGATLVESVTDILENIPHYQYVTPNYTEQKSPSSANEQLTSEPPSYPKLYA
QLSHIPISLDELSARLSLPIDVLLTQLLSLELQQLAVCENGLYRRS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=957657 ACIO08_RS04795 WP_410679125.1 1025417..1026517(-) (dprA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGATAACCAATGAGATGTTACTCCGTTTGCTCCAAATTCCTAAACTTGGAGCAAATACTATTCAAAAAATACTGGGTGA
AATTAGTTTTACACAGCTTTTAGATTATGATGAATACGCGTTTAAACAGATTGGTTGGTCAGAAAAGCAAATTCAACGTT
GGTTTTACCCAGAACGAAAATTCATTGATCCTGCGTTACAATGGGCAGAAAGTGCGGGTAATTTTTTGCTTAATTTTACC
GATGAAGATTACCCTTATTTGCTGAAGCAAATTCCCTCCGCTCCGCCGATTTTATTTTTGCAAGGAAATTTGACCGCACT
TTCTCAACCACAAATTGCAATAGTAGGTAGCCGTTATTGCTCGAATTATGGGGAATATTGGGCGAAGTATTTTGCTTCAG
AGTTGAGTCTTGCGGGCTTTGCGATAACCAGTGGGCTAGCTTTAGGGATCGACGGATTTTGTCATCAAGCCGTGGTGGAT
ATTCAAGGGCAAACGCTGGCGGTGCTTGGAAGTGGGTTGGATAAGGTGTATCCTGCAAAACATCGCCGTTTGGCTGAGCA
AATTATTGAGCATAACGGCACATTGATTTCCGAATTTCTCCCCGCGCAACCGCCCGTTGCGGAGAATTTCCCACGCCGAA
ACCGTATTATTAGCGGGCTTTCGCTTGGCACGCTAATTATTGAAGCCACCGAGCGGAGCGGTTCACTCATTACGGCTCGT
TATGCGTTGGAGCAAAACCGTGAGGTCTTTGCCTTGCCGGGCAATATTCAAAATGGCTTTAGTGAGGGCTGTCATAAGCT
CATCAAGCAAGGGGCAACATTAGTGGAGAGCGTGACGGATATTTTAGAAAATATCCCACATTATCAGTATGTTACACCGA
ATTATACCGAACAGAAATCGCCATCGTCGGCGAACGAGCAGCTAACTTCAGAGCCACCAAGTTATCCCAAACTTTACGCT
CAATTAAGCCACATTCCCATTAGCCTTGATGAACTTTCAGCCCGTTTGTCATTGCCGATTGATGTCTTATTAACCCAATT
ATTAAGTTTAGAATTGCAACAATTAGCGGTTTGTGAAAATGGGCTGTATCGGCGAAGTTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

62.703

100

0.634
  dprA Glaesserella parasuis strain SC1401

56.571

95.628

0.541
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.443

100

0.434
  dprA Vibrio cholerae strain A1552

43.443

100

0.434
  dprA Vibrio campbellii strain DS40M4

42.618

98.087

0.418
  dprA Legionella pneumophila strain ERS1305867

39.51

100

0.396
  dprA Acinetobacter baumannii strain A118

39.776

97.541

0.388