Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACIO08_RS04785 Genome accession   NZ_CP173233
Coordinates   1023163..1024656 (-) Length   497 a.a.
NCBI ID   WP_410679123.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1018163..1029656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS04775 (ACIO08_04775) glpT 1019968..1021413 (+) 1446 WP_046097260.1 glycerol-3-phosphate transporter -
  ACIO08_RS04780 (ACIO08_04780) glpQ 1021507..1022601 (+) 1095 WP_410679122.1 glycerophosphodiester phosphodiesterase -
  ACIO08_RS04785 (ACIO08_04785) pilA 1023163..1024656 (-) 1494 WP_410679123.1 signal recognition particle-docking protein FtsY Machinery gene
  ACIO08_RS04790 (ACIO08_04790) rsmD 1024812..1025420 (+) 609 WP_264245187.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACIO08_RS04795 (ACIO08_04795) dprA 1025417..1026517 (-) 1101 WP_410679125.1 DNA-processing protein DprA Machinery gene
  ACIO08_RS04800 (ACIO08_04800) pilF/pilF2 1026662..1027204 (-) 543 WP_110479719.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ACIO08_RS04805 (ACIO08_04805) - 1027238..1028407 (-) 1170 WP_410679126.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 54658.08 Da        Isoelectric Point: 4.2270

>NTDB_id=957656 ACIO08_RS04785 WP_410679123.1 1023163..1024656(-) (pilA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MAEKNKKGGFWSWFGLGKKEEEAVEPSLLQENAEEINVSQTEIPSEQSAVENPQDFAQETESLTQTDITPEQSAVENSQG
FEQETETLTQAEISSEQSAVENPQGFEQETESVTQTDITLEQSAVENPQGFEQETESLTQTDITPGQSAVENPQGFEQET
ESLTQTEITPEQSEAENPQPAEKEKPSKGGFFSRLVKGLIRTKQNIGSGFLSLFSGKKIDDDLFEELEEQLLIADIGMPT
TTKIINNLTQHASRKQLKEADLLYQQLKAELADIIKPVAQPLQIDSSKKPYVILMVGVNGVGKTTTIGKLARQFQMQGKS
VMLAAGDTFRAAAVEQLQVWGERNHIPVIAQNTGADSASVIYDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRV
MKKYDETAPHEIMLTLDAGTGQNAISQAKLFHEAVGLTGISLTKLDGTAKGGVIFSIADQFKLPIRYIGIGEKIEDLRPF
QAEEFIEALFSKELETQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=957656 ACIO08_RS04785 WP_410679123.1 1023163..1024656(-) (pilA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGGCAGAAAAAAATAAAAAAGGCGGATTTTGGTCTTGGTTTGGCTTAGGTAAAAAGGAAGAGGAAGCGGTAGAGCCTAG
TTTATTGCAAGAAAATGCGGAAGAAATCAACGTTTCACAAACAGAAATCCCCTCAGAACAAAGTGCGGTAGAAAATCCGC
AAGATTTTGCACAAGAAACGGAAAGCCTAACGCAAACCGACATCACGCCAGAGCAAAGTGCGGTGGAAAATTCACAAGGT
TTTGAGCAAGAAACGGAAACTCTAACGCAAGCTGAAATTTCCTCAGAGCAAAGTGCGGTAGAAAATCCGCAAGGTTTTGA
GCAAGAAACGGAAAGCGTAACGCAAACCGATATCACGCTAGAGCAAAGTGCGGTAGAAAATCCGCAAGGTTTTGAGCAAG
AAACGGAAAGCCTAACGCAAACCGACATCACGCCAGGGCAAAGTGCGGTGGAAAATCCGCAAGGTTTTGAGCAAGAAACG
GAAAGCCTAACGCAAACCGAAATCACGCCAGAGCAAAGTGAAGCAGAAAATCCACAACCCGCTGAGAAAGAAAAACCAAG
CAAAGGGGGCTTTTTCAGTCGATTAGTGAAAGGGCTGATTCGTACCAAACAGAATATCGGTTCAGGCTTTTTGAGCCTAT
TTTCAGGTAAGAAAATTGATGATGATTTGTTTGAAGAGCTGGAAGAACAGCTATTGATCGCCGATATTGGAATGCCGACA
ACAACCAAGATTATCAATAATTTAACTCAACACGCCAGCCGCAAACAGCTAAAAGAGGCAGATTTGTTGTATCAACAGCT
TAAAGCGGAGCTTGCAGATATTATTAAGCCTGTCGCACAGCCGCTGCAAATTGATAGCAGCAAAAAGCCTTATGTGATTT
TGATGGTGGGCGTAAATGGCGTGGGCAAAACTACCACCATTGGCAAACTTGCACGTCAATTCCAAATGCAAGGGAAATCC
GTGATGTTAGCCGCTGGGGATACTTTCCGTGCCGCCGCCGTAGAACAGCTACAAGTGTGGGGGGAACGCAATCATATTCC
CGTTATCGCTCAAAACACGGGAGCGGATTCTGCTTCCGTGATTTATGACGCAATGCAATCAGCCGCGGCGAGAAATATTG
ACATTTTAATCGCCGATACCGCAGGGCGTTTGCAAAATAAAAATAACTTAATGGACGAGCTGAAAAAAATCGTGCGAGTG
ATGAAAAAATACGATGAAACCGCACCGCACGAAATTATGCTGACCCTTGACGCGGGTACAGGGCAAAACGCCATTAGCCA
AGCGAAATTATTCCACGAAGCCGTAGGGCTAACGGGCATTAGCTTAACGAAGCTCGACGGCACAGCAAAAGGCGGAGTGA
TTTTCTCCATCGCAGATCAATTTAAATTGCCGATTCGCTATATTGGTATCGGTGAAAAAATTGAAGATCTACGCCCATTC
CAAGCGGAAGAATTTATTGAGGCTTTATTTAGTAAAGAATTGGAAACTCAATAG

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(207-271)

SRP54-type protein, GTPase domain (SRP54)

(291-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.133

83.501

0.36