Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACIO03_RS08935 Genome accession   NZ_CP173231
Coordinates   1845041..1845631 (+) Length   196 a.a.
NCBI ID   WP_264256534.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1840041..1850631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO03_RS08915 (ACIO03_08915) - 1841695..1842045 (+) 351 WP_410678005.1 DUF305 domain-containing protein -
  ACIO03_RS08920 (ACIO03_08920) - 1842205..1842561 (+) 357 Protein_1713 DNA-processing protein DprA -
  ACIO03_RS08925 (ACIO03_08925) - 1842565..1843116 (-) 552 Protein_1714 BCCT family transporter -
  ACIO03_RS08930 (ACIO03_08930) tig 1843624..1844922 (+) 1299 WP_264256532.1 trigger factor -
  ACIO03_RS08935 (ACIO03_08935) clpP 1845041..1845631 (+) 591 WP_264256534.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACIO03_RS08940 (ACIO03_08940) clpX 1845635..1846885 (+) 1251 WP_264256535.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACIO03_RS08945 (ACIO03_08945) aspA 1847108..1848535 (+) 1428 WP_110479872.1 aspartate ammonia-lyase -
  ACIO03_RS08950 (ACIO03_08950) - 1848626..1850422 (-) 1797 WP_264256537.1 AMP-dependent synthetase/ligase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21603.84 Da        Isoelectric Point: 5.0640

>NTDB_id=957569 ACIO03_RS08935 WP_264256534.1 1845041..1845631(+) (clpP) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
MALIPMVVEQTARGERSYDIYSRLLKERVIFLSGQVEDNMANLIVAQLLFLESENPDKDISIYINSPGGSVTAGMAIYDT
MQFIKPDVRTLCIGQACSMGAFLLAGGTPGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKIKQTLNEKLAFHTGQ
SLAKIENDTDRDNFMSAEEAKAYGLIDEVLIKRETE

Nucleotide


Download         Length: 591 bp        

>NTDB_id=957569 ACIO03_RS08935 WP_264256534.1 1845041..1845631(+) (clpP) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
ATGGCTTTAATCCCTATGGTCGTTGAACAGACTGCAAGAGGCGAGCGTTCATATGACATTTATTCACGTTTATTAAAAGA
GCGTGTGATTTTTTTAAGTGGGCAAGTTGAAGACAATATGGCTAATTTGATCGTCGCACAACTGCTTTTTTTAGAATCGG
AAAATCCAGACAAAGATATTAGTATTTACATTAACTCTCCGGGCGGCTCGGTAACCGCGGGAATGGCGATTTATGACACA
ATGCAATTCATTAAGCCTGATGTGAGAACCCTTTGTATTGGACAGGCTTGTTCAATGGGAGCATTTTTACTCGCGGGTGG
CACACCGGGCAAACGTGCGGCATTACCAAATGCACGAGTGATGATTCACCAACCATTAGGGGGATTCCGTGGGCAGGCTT
CCGATATTCAAATTCACGCCCAAGAAATCTTAAAAATTAAGCAGACATTGAATGAAAAATTGGCATTCCACACAGGGCAG
TCTTTAGCGAAAATTGAAAACGATACTGATCGCGACAATTTTATGTCTGCCGAAGAAGCCAAAGCTTACGGCTTAATTGA
CGAAGTCCTAATTAAAAGAGAAACGGAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.526

98.98

0.668
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.368

96.939

0.653
  clpP Streptococcus pyogenes JRS4

54.639

98.98

0.541
  clpP Streptococcus pyogenes MGAS315

54.639

98.98

0.541
  clpP Streptococcus pneumoniae R6

55.789

96.939

0.541
  clpP Streptococcus pneumoniae TIGR4

55.789

96.939

0.541
  clpP Streptococcus pneumoniae D39

55.789

96.939

0.541
  clpP Streptococcus pneumoniae Rx1

55.789

96.939

0.541
  clpP Streptococcus thermophilus LMG 18311

54.124

98.98

0.536
  clpP Streptococcus thermophilus LMD-9

54.124

98.98

0.536
  clpP Streptococcus mutans UA159

53.333

99.49

0.531
  clpP Lactococcus lactis subsp. cremoris KW2

53.684

96.939

0.52
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.632

96.939

0.51