Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACIO04_RS08615 Genome accession   NZ_CP173229
Coordinates   1760787..1761887 (+) Length   366 a.a.
NCBI ID   WP_410679752.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1755787..1766887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO04_RS08590 (ACIO04_08590) mog 1756525..1757103 (+) 579 WP_264256079.1 molybdopterin adenylyltransferase -
  ACIO04_RS08595 (ACIO04_08595) glnB 1757132..1757470 (+) 339 WP_017805299.1 nitrogen regulatory protein P-II -
  ACIO04_RS08600 (ACIO04_08600) - 1757473..1758525 (+) 1053 WP_264256080.1 AI-2E family transporter -
  ACIO04_RS08605 (ACIO04_08605) - 1758897..1760066 (+) 1170 WP_264256081.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  ACIO04_RS08610 (ACIO04_08610) pilF/pilF2 1760100..1760642 (+) 543 WP_410679751.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ACIO04_RS08615 (ACIO04_08615) dprA 1760787..1761887 (+) 1101 WP_410679752.1 DNA-processing protein DprA Machinery gene
  ACIO04_RS08620 (ACIO04_08620) rsmD 1761884..1762492 (-) 609 WP_410679753.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACIO04_RS08625 (ACIO04_08625) pilA 1762648..1764141 (+) 1494 WP_410679754.1 signal recognition particle-docking protein FtsY Machinery gene
  ACIO04_RS08630 (ACIO04_08630) - 1764338..1764544 (-) 207 WP_410679755.1 hypothetical protein -
  ACIO04_RS08635 (ACIO04_08635) glpQ 1764704..1765798 (-) 1095 WP_410679756.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 40878.65 Da        Isoelectric Point: 4.7855

>NTDB_id=957462 ACIO04_RS08615 WP_410679752.1 1760787..1761887(+) (dprA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MITNEMLLRLLQIPKLGANTIQKILGEISLTQLLDYDEYAFKQIGWSEKQIQRWFYPERKFIDPALEWAESAGNFLLNFT
DEDYPYLLKQIPSAPPILFLQGNLTALSQPQIAIVGSRYCSNYGEYWAKYFASELSLAGFAITSGLALGIDGFCHQAVVD
IQGQTLAVLGSGLDKVYPAKHRRLAEQIIEHNGTLISEFLPAQAPVAENFPRRNRIISGLSLGTLIIEATERSGSLITAR
YALEQNREIFALPGNIQNGFSEGCHKLIKQGATLVESVTDILENLPHYQYVTPNYTEQKSPSSANEQLTSEPPSYPELYA
QLSHIPISLDELSARLSLPIDVLLTQLLSLELQQLAVCENGLYRRS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=957462 ACIO04_RS08615 WP_410679752.1 1760787..1761887(+) (dprA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGATAACCAATGAGATGTTACTCCGTTTACTCCAAATTCCTAAACTTGGAGCAAATACTATTCAAAAAATACTGGGTGA
AATTAGTCTTACACAGCTTTTAGATTATGATGAATACGCGTTTAAACAGATTGGTTGGTCAGAAAAGCAAATTCAACGTT
GGTTTTACCCAGAACGAAAATTCATCGACCCAGCATTAGAATGGGCGGAAAGTGCGGGTAATTTTTTGCTTAATTTTACC
GATGAAGATTACCCTTATTTGCTGAAGCAAATTCCCTCCGCCCCGCCGATTTTATTTTTGCAAGGAAATTTGACCGCACT
TTCTCAACCACAAATTGCAATAGTAGGTAGCCGTTATTGCTCGAATTATGGGGAATATTGGGCGAAGTATTTTGCTTCAG
AGTTGAGTCTTGCGGGCTTTGCGATAACCAGTGGGCTAGCTTTAGGGATCGACGGATTTTGTCATCAAGCCGTGGTGGAT
ATTCAAGGGCAAACGCTGGCGGTGCTTGGAAGTGGGTTGGATAAGGTGTATCCTGCAAAACATCGCCGTTTGGCTGAGCA
AATTATTGAGCATAACGGCACATTGATTTCCGAATTTCTCCCCGCGCAAGCGCCCGTTGCGGAGAATTTCCCACGCCGAA
ACCGTATTATTAGCGGGCTTTCGCTTGGCACGCTAATTATTGAAGCCACCGAGCGGAGCGGTTCACTCATTACGGCTCGT
TATGCGTTGGAGCAAAACCGTGAGATCTTTGCCTTGCCGGGCAATATTCAAAATGGCTTTAGTGAGGGCTGTCATAAGCT
CATCAAACAAGGGGCGACATTAGTGGAAAGCGTGACGGATATTTTAGAAAATCTCCCACATTATCAGTATGTTACACCGA
ATTATACCGAACAGAAATCGCCATCGTCGGCGAACGAGCAGCTAACTTCAGAGCCACCAAGTTATCCCGAACTTTACGCT
CAATTAAGCCACATTCCCATTAGCCTTGATGAACTTTCAGCCCGTTTGTCATTGCCGATTGATGTCTTATTAACCCAATT
ATTAAGTTTAGAATTGCAACAATTAGCGGTTTGTGAAAATGGGCTGTATCGGCGAAGTTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

62.973

100

0.637
  dprA Glaesserella parasuis strain SC1401

56.734

95.355

0.541
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.169

100

0.432
  dprA Vibrio cholerae strain A1552

43.169

100

0.432
  dprA Vibrio campbellii strain DS40M4

42.061

98.087

0.413
  dprA Legionella pneumophila strain ERS1305867

40.437

100

0.404