Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACIO04_RS08625 Genome accession   NZ_CP173229
Coordinates   1762648..1764141 (+) Length   497 a.a.
NCBI ID   WP_410679754.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1757648..1769141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO04_RS08605 (ACIO04_08605) - 1758897..1760066 (+) 1170 WP_264256081.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  ACIO04_RS08610 (ACIO04_08610) pilF/pilF2 1760100..1760642 (+) 543 WP_410679751.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ACIO04_RS08615 (ACIO04_08615) dprA 1760787..1761887 (+) 1101 WP_410679752.1 DNA-processing protein DprA Machinery gene
  ACIO04_RS08620 (ACIO04_08620) rsmD 1761884..1762492 (-) 609 WP_410679753.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACIO04_RS08625 (ACIO04_08625) pilA 1762648..1764141 (+) 1494 WP_410679754.1 signal recognition particle-docking protein FtsY Machinery gene
  ACIO04_RS08630 (ACIO04_08630) - 1764338..1764544 (-) 207 WP_410679755.1 hypothetical protein -
  ACIO04_RS08635 (ACIO04_08635) glpQ 1764704..1765798 (-) 1095 WP_410679756.1 glycerophosphodiester phosphodiesterase -
  ACIO04_RS08640 (ACIO04_08640) glpT 1765892..1767337 (-) 1446 WP_046097260.1 glycerol-3-phosphate transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 54862.50 Da        Isoelectric Point: 4.2271

>NTDB_id=957463 ACIO04_RS08625 WP_410679754.1 1762648..1764141(+) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MAEKNKKGGFWSWFGLGKKEEEAVEPSLLQENAEEINVSQTEIPSEQSAVENPQGFEQETETLTQAEISSEQSAVENPQG
FEQEMETLTQAEISSEQSAVKNPQDFEQETESVTQTNITPEQSAVENPQDFEQETESLTQIEITPEQSAVENPQDFVQET
ESLTQTDITPEQSAVENPQPAEKEKPSKGGFFSRLVKGLIRTKQNIGSGFLSLFSGKKIDDDLFEELEEQLLIADIGMPT
TTKIINNLTQHASRKQLKEADLLYQQLKAELADIIKPVAQPLQIDSSKKPYVILMVGVNGVGKTTTIGKLARQFQMQGKS
VMLAAGDTFRAAAVEQLQVWGERNYIPVIAQNTGADSASVIYDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRV
MKKYDETAPHEIMLTLDAGTGQNAISQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGIGEKIEDLRPF
QAEEFIEALFSKELETQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=957463 ACIO04_RS08625 WP_410679754.1 1762648..1764141(+) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGGCAGAAAAAAATAAAAAAGGCGGATTTTGGTCTTGGTTTGGCTTAGGTAAAAAGGAAGAAGAAGCGGTAGAGCCTAG
TTTATTGCAAGAAAATGCGGAAGAAATCAACGTTTCACAAACAGAAATCCCCTCAGAACAAAGTGCGGTGGAAAATCCAC
AAGGTTTTGAGCAAGAAACGGAAACTCTAACGCAAGCTGAAATTTCCTCAGAGCAAAGTGCGGTAGAAAATCCGCAAGGT
TTTGAGCAAGAAATGGAAACTCTAACGCAAGCTGAAATTTCCTCAGAGCAAAGTGCTGTGAAAAATCCGCAAGATTTTGA
GCAAGAAACGGAAAGCGTAACGCAAACCAATATCACGCCAGAGCAAAGTGCGGTAGAAAACCCGCAAGATTTTGAGCAAG
AAACGGAAAGCCTAACGCAAATCGAAATCACGCCAGAGCAAAGTGCGGTGGAAAATCCGCAAGATTTTGTGCAAGAAACG
GAAAGCCTAACGCAAACCGACATCACGCCAGAGCAAAGTGCGGTAGAAAATCCACAACCCGCTGAGAAAGAAAAACCAAG
CAAAGGGGGCTTTTTCAGTCGCTTAGTGAAAGGGCTGATTCGTACCAAACAGAATATAGGTTCAGGCTTTTTGAGCCTAT
TTTCAGGTAAGAAAATTGATGATGATTTGTTTGAAGAGCTGGAAGAACAGCTATTGATCGCCGATATTGGAATGCCGACA
ACAACCAAGATTATCAATAATTTAACTCAACACGCCAGCCGTAAACAGCTAAAAGAGGCAGATTTATTGTATCAACAGCT
TAAAGCGGAGCTTGCGGACATTATCAAACCCGTTGCACAGCCGCTGCAAATTGATAGCAGCAAAAAGCCTTATGTGATTT
TGATGGTGGGCGTAAATGGCGTGGGCAAAACTACCACCATTGGCAAACTTGCACGTCAATTCCAAATGCAAGGGAAATCC
GTGATGTTGGCAGCAGGGGATACTTTCCGTGCCGCCGCCGTAGAACAACTACAAGTGTGGGGGGAACGCAATTATATTCC
CGTTATCGCTCAAAACACGGGGGCGGATTCTGCTTCCGTGATTTATGACGCAATGCAATCAGCCGCGGCGAGAAATATTG
ACATTTTAATCGCCGATACCGCAGGGCGTTTGCAAAATAAAAATAACTTAATGGACGAGCTGAAAAAAATCGTGCGAGTG
ATGAAAAAATACGATGAAACCGCACCGCACGAAATTATGCTGACCCTTGACGCGGGTACAGGGCAAAACGCCATCAGCCA
AGCGAAATTATTCCACGAAGCCGTAGGGCTAACGGGGATTAGCTTAACGAAACTTGACGGCACGGCAAAAGGCGGAGTGA
TTTTCGCCATCGCAGATCAATTTAAATTGCCGATTCGCTATATTGGTATCGGTGAAAAAATTGAAGACCTCCGCCCATTC
CAAGCGGAAGAATTTATTGAGGCTTTATTTAGTAAAGAATTGGAAACTCAATAG

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(291-490)

SRP54-type protein, helical bundle domain (SRP54_N)

(207-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

44.717

81.891

0.366