Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   WIR04_RS16550 Genome accession   NZ_CP149130
Coordinates   3661255..3661575 (+) Length   106 a.a.
NCBI ID   WP_338888363.1    Uniprot ID   -
Organism   Aeromonas rivipollensis strain BE1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3656255..3666575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIR04_RS16525 trhA 3656858..3657493 (-) 636 WP_338888356.1 PAQR family membrane homeostasis protein TrhA -
  WIR04_RS16530 - 3657725..3659230 (+) 1506 WP_338888358.1 aminotransferase class V-fold PLP-dependent enzyme -
  WIR04_RS16535 - 3659371..3659922 (+) 552 WP_025325884.1 septation protein A -
  WIR04_RS16540 - 3659947..3660243 (+) 297 WP_025325883.1 YciI family protein -
  WIR04_RS16545 cysQ 3660334..3661089 (-) 756 WP_338888361.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  WIR04_RS16550 comEA 3661255..3661575 (+) 321 WP_338888363.1 ComEA family DNA-binding protein Machinery gene
  WIR04_RS16555 galU 3661669..3662580 (+) 912 WP_025325880.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  WIR04_RS16560 - 3662794..3664191 (+) 1398 WP_289987651.1 peptide MFS transporter -
  WIR04_RS16565 - 3664262..3665233 (-) 972 WP_025325878.1 response regulator -
  WIR04_RS16570 - 3665545..3666219 (+) 675 WP_338888369.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11188.01 Da        Isoelectric Point: 9.0238

>NTDB_id=956772 WIR04_RS16550 WP_338888363.1 3661255..3661575(+) (comEA) [Aeromonas rivipollensis strain BE1]
MNRKTLIAALLLACLPLLSQPALAADKPATKPATTVTNTKEVGKINLNTASADELAALKGVGEKKAQAIVDYREKQGKFT
SVDQLEEVSGIGPATLDANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=956772 WIR04_RS16550 WP_338888363.1 3661255..3661575(+) (comEA) [Aeromonas rivipollensis strain BE1]
ATGAACCGAAAAACACTGATCGCCGCCCTGCTGCTGGCTTGCCTGCCCCTGCTGAGCCAGCCTGCGCTCGCCGCCGACAA
GCCGGCTACCAAACCGGCCACAACTGTCACCAATACCAAGGAGGTGGGCAAGATCAACCTGAACACCGCCAGTGCCGATG
AACTCGCGGCGCTGAAGGGCGTTGGCGAGAAGAAGGCGCAAGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACC
TCGGTGGATCAGTTGGAAGAGGTTAGCGGCATAGGGCCCGCCACCCTGGATGCGAACCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

50.467

100

0.509
  comEA Vibrio cholerae strain A1552

50.467

100

0.509
  comE1/comEA Haemophilus influenzae Rd KW20

44.144

100

0.462
  comEA/comE1 Glaesserella parasuis strain SC1401

47.525

95.283

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

44.898

92.453

0.415
  comEA Legionella pneumophila str. Paris

43.878

92.453

0.406
  comEA Legionella pneumophila strain ERS1305867

43.878

92.453

0.406
  comEA Acinetobacter baylyi ADP1

49.367

74.528

0.368