Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   WJM78_RS16765 Genome accession   NZ_CP149129
Coordinates   3676254..3676574 (+) Length   106 a.a.
NCBI ID   WP_042038584.1    Uniprot ID   -
Organism   Aeromonas popoffii strain BE5     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3671254..3681574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM78_RS16740 - 3671884..3672519 (-) 636 WP_339010677.1 hemolysin III family protein -
  WJM78_RS16745 - 3672733..3674238 (+) 1506 WP_339015903.1 aminotransferase class V-fold PLP-dependent enzyme -
  WJM78_RS16750 - 3674354..3674905 (+) 552 WP_287146781.1 septation protein A -
  WJM78_RS16755 - 3674930..3675226 (+) 297 WP_212514412.1 YciI family protein -
  WJM78_RS16760 cysQ 3675316..3676086 (-) 771 WP_339010683.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  WJM78_RS16765 comEA 3676254..3676574 (+) 321 WP_042038584.1 ComEA family DNA-binding protein Machinery gene
  WJM78_RS16770 galU 3676669..3677580 (+) 912 WP_042038583.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  WJM78_RS16775 - 3677797..3679194 (+) 1398 WP_339010687.1 peptide MFS transporter -
  WJM78_RS16780 - 3679270..3680241 (-) 972 WP_042038581.1 response regulator -
  WJM78_RS16785 - 3680642..3681328 (+) 687 WP_339010689.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11252.13 Da        Isoelectric Point: 9.6863

>NTDB_id=956740 WJM78_RS16765 WP_042038584.1 3676254..3676574(+) (comEA) [Aeromonas popoffii strain BE5]
MNYKTLTATLLLSCLPLLSQPLLAADKPVAKPATTVTTAKESGKVNLNTANINELTALKGIGEKKAQAIVDFREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=956740 WJM78_RS16765 WP_042038584.1 3676254..3676574(+) (comEA) [Aeromonas popoffii strain BE5]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTGAGCCAGCCTCTGCTGGCTGCTGACAA
GCCGGTTGCCAAGCCAGCCACCACAGTCACCACCGCAAAGGAGAGCGGCAAGGTGAACCTGAATACGGCGAACATCAATG
AGTTAACTGCCCTCAAGGGGATCGGCGAGAAGAAGGCCCAAGCTATCGTCGATTTTCGCGAGAAGCAGGGCAAGTTCACC
ACGGTCGACCAACTGGCCGATGTCAGTGGCATAGGGCCGGCAACCCTGGAAGCAAATCGGGACATGATCATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

51.818

100

0.538
  comEA Vibrio cholerae C6706

51.818

100

0.538
  comE1/comEA Haemophilus influenzae Rd KW20

43.243

100

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

91.509

0.406
  comEA/comE1 Glaesserella parasuis strain SC1401

60.87

65.094

0.396
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.316

71.698

0.368
  comEA Vibrio campbellii strain DS40M4

39

94.34

0.368