Detailed information NTG0095622

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: LGMS210922A_RS01780
• Genome accession: NZ_AP026069
• Coordinates: 360953..361552 (-)
• Length: 199 a.a.
• NCBI ID: WP_003134020.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain MS210922A
• Function: degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 355953..366552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGMS210922A_RS01770 (LGMS210922A_03410)	-	356005..357228 (+)	1224	WP_014024307.1	FtsW/RodA/SpoVE family cell cycle protein	-
LGMS210922A_RS01775 (LGMS210922A_03420)	-	357429..360848 (+)	3420	WP_265150206.1	pyruvate carboxylase	-
LGMS210922A_RS01780 (LGMS210922A_03430)	clpP	360953..361552 (-)	600	WP_003134020.1	ATP-dependent Clp protease proteolytic subunit	Regulator
LGMS210922A_RS01785 (LGMS210922A_03440)	-	361729..362106 (+)	378	WP_042217360.1	VOC family protein	-
LGMS210922A_RS01790 (LGMS210922A_03450)	-	362166..362696 (+)	531	WP_003134023.1	hypothetical protein	-
LGMS210922A_RS01795 (LGMS210922A_03460)	spx	362859..363257 (+)	399	WP_003134024.1	transcriptional regulator Spx	-
LGMS210922A_RS01800 (LGMS210922A_03470)	-	363394..364164 (+)	771	WP_165705595.1	TatD family hydrolase	-
LGMS210922A_RS01805 (LGMS210922A_03480)	rnmV	364164..364709 (+)	546	WP_265150210.1	ribonuclease M5	-
LGMS210922A_RS01810 (LGMS210922A_03490)	-	364706..365632 (+)	927	WP_003134028.1	ABC transporter ATP-binding protein	-
LGMS210922A_RS01815 (LGMS210922A_03500)	-	365625..366395 (+)	771	WP_003134031.1	ABC transporter permease	-

Sequence

Protein

• Length: 199 a.a.
• Molecular weight: 21787.90 Da
• Isoelectric Point: 4.7242

>NTDB_id=95622 LGMS210922A_RS01780 WP_003134020.1 360953..361552(-) (clpP) [Lactococcus garvieae strain MS210922A]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN
SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide

• Length: 600 bp

>NTDB_id=95622 LGMS210922A_RS01780 WP_003134020.1 360953..361552(-) (clpP) [Lactococcus garvieae strain MS210922A]
ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGCGCATATGACATTTATAGCCGTCTACTGAA
AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG
CCCAAGACAGCACAAAGGACATTTACCTCTACATTAACACACCTGGTGGTTCTGTTTCTGCTGGTCTTGCAATTGTCGAT
ACTATGAACTTCATCAAATCTGATGTTCAAACCATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG
TGGTACAAAAGGCAAACGTTTCATGTTGCCACATGCGGAATACATGATTCACCAACCTATGGGCGGTACTGGTGGTGGTA
CACAACAAACAGACATGGCTATTGCTGCGGAACATTTGCTCAAAACACGTCGTACTTTAGAAAAGATCTTGGCCGAAAAC
TCTGGACAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGACAACTGGATGACAGCACAAGAAACATTAGATTATGG
TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (14-195)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus pneumoniae Rx1	89.796	98.492	0.884
clpP	Streptococcus pneumoniae D39	89.796	98.492	0.884
clpP	Streptococcus pneumoniae R6	89.796	98.492	0.884
clpP	Streptococcus pneumoniae TIGR4	89.796	98.492	0.884
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.94	100	0.879
clpP	Lactococcus lactis subsp. cremoris KW2	87.437	100	0.874
clpP	Streptococcus thermophilus LMG 18311	87.755	98.492	0.864
clpP	Streptococcus thermophilus LMD-9	87.755	98.492	0.864
clpP	Streptococcus pyogenes JRS4	84.184	98.492	0.829
clpP	Streptococcus pyogenes MGAS315	84.184	98.492	0.829
clpP	Streptococcus mutans UA159	84.184	98.492	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	58.421	95.477	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553