Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   WHX55_RS01920 Genome accession   NZ_CP148752
Coordinates   424517..426586 (+) Length   689 a.a.
NCBI ID   WP_353741925.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419517..431586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS01900 (WHX55_01900) comM 421729..422793 (+) 1065 WP_353741923.1 pilus assembly protein PilM Machinery gene
  WHX55_RS01905 (WHX55_01905) - 422793..423359 (+) 567 WP_150756786.1 PilN domain-containing protein -
  WHX55_RS01910 (WHX55_01910) pilO 423356..423979 (+) 624 WP_150756785.1 type 4a pilus biogenesis protein PilO -
  WHX55_RS01915 (WHX55_01915) - 423976..424503 (+) 528 WP_353741924.1 pilus assembly protein PilP -
  WHX55_RS01920 (WHX55_01920) pilQ 424517..426586 (+) 2070 WP_353741925.1 type IV pilus secretin PilQ Machinery gene
  WHX55_RS01925 (WHX55_01925) aroK 426591..427109 (+) 519 WP_045061936.1 shikimate kinase AroK -
  WHX55_RS01930 (WHX55_01930) aroB 427261..428361 (+) 1101 WP_095942362.1 3-dehydroquinate synthase -
  WHX55_RS01935 (WHX55_01935) - 428372..429961 (+) 1590 WP_223457617.1 AAA family ATPase -

Sequence

Protein


Download         Length: 689 a.a.        Molecular weight: 74431.46 Da        Isoelectric Point: 5.4087

>NTDB_id=955442 WHX55_RS01920 WP_353741925.1 424517..426586(+) (pilQ) [Pseudomonas fluorescens strain AB1]
MNRILSTVGLSLWIALLSPMVQAANLRALDVAALPGDRVELKLSFDAPPPVPRGYTTDSPARIALDLPGVASQLASKTRD
LGNGNARSATVVEARDRTRLIINLTQPAPYESRIEGNNLLIVVGQGGKPSTSRQTATATPVPARAAATAGKVIRGVDFQR
GTQGEGNVVIDLSDPSIAADIQEREGKIIVGFAKTRLPEPLRVRLDVKDFATPVQFVNASASGDRATISIEPGGTFDYST
YQTDNKLTVSVRPATVDELQKRNAGQQAYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPWDQA
LDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSAEAKPDERG
SITVDERTNNIIAYQTQDRLDELRRIVTQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSNGLNGS
STIGTPGSTSTNSPFVDMGVANNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQEA
SSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDFLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQS
KVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2070 bp        

>NTDB_id=955442 WHX55_RS01920 WP_353741925.1 424517..426586(+) (pilQ) [Pseudomonas fluorescens strain AB1]
ATGAACAGGATTCTTTCCACCGTCGGCCTTTCGCTATGGATAGCGTTGTTGTCGCCGATGGTACAAGCGGCCAATCTCAG
GGCGCTGGATGTCGCCGCGCTGCCGGGTGACCGTGTCGAGTTGAAGTTGTCGTTCGATGCGCCGCCCCCGGTGCCCCGCG
GCTACACGACGGATTCGCCGGCCCGGATTGCCTTGGATTTACCGGGTGTCGCCAGTCAGCTGGCCAGCAAGACTCGCGAT
CTCGGCAATGGAAATGCCCGCAGTGCGACGGTAGTGGAAGCCCGGGACCGTACGCGGTTGATCATCAACCTGACCCAGCC
GGCCCCGTATGAGTCGCGAATTGAAGGCAACAATTTGCTGATAGTTGTCGGGCAAGGGGGTAAACCGTCGACATCCAGGC
AGACGGCCACAGCAACGCCGGTTCCGGCACGAGCCGCCGCGACGGCAGGCAAGGTCATTCGGGGTGTGGATTTCCAACGG
GGAACCCAGGGCGAAGGCAACGTGGTGATCGACTTGTCGGATCCATCGATTGCGGCCGACATACAAGAGCGCGAGGGCAA
GATCATCGTCGGCTTTGCCAAAACCCGATTGCCCGAGCCATTGCGCGTGCGTCTGGACGTGAAAGATTTCGCCACGCCAG
TGCAGTTCGTCAATGCCAGCGCGAGCGGCGATCGAGCCACCATCAGCATTGAACCCGGTGGCACGTTCGATTACTCGACC
TATCAGACTGACAATAAGCTCACGGTCAGCGTTCGCCCGGCGACGGTCGACGAGCTGCAAAAGCGCAATGCCGGGCAACA
GGCCTACAGCGGCGAGAAGCTGTCGCTGAATTTCCAGGACATCGATGTGCGCTCGGTGCTGCAACTGATCGCCGATTTCA
CCAACCTCAATCTGGTGGCCAGCGACACGGTCCAGGGGGGAATTACCCTGCGCTTGCAGAACGTTCCGTGGGATCAGGCG
CTGGATCTGGTGCTGAAAACCAAGGGGCTGGATAAGCGCAAGGTCGGCAATGTCCTGCTTGTTGCGCCGGCCGATGAAAT
TGCTGCCCGTGAGCGTCAGGAACTCGAATCGCAGAAGCAGATTGCCGATCTGGCGCCGTTGCGTCGGGAGCTGTTGCAGG
TCAATTACGCCAAGGCGGCGGACATCGCCAAGCTCTTCCAGTCGGTGACCAGTGCCGAAGCGAAACCCGACGAACGGGGG
TCGATCACCGTCGATGAGCGCACCAACAACATCATTGCCTACCAGACCCAGGACCGGCTGGACGAGCTGCGCAGGATCGT
CACGCAGCTGGATATCCCGGTGCGTCAGGTGATGATCGAGGCGCGCATTGTCGAAGCCAACGTCGACTATGACAAAAGCC
TCGGGGTGCGCTGGGGCGGTTCGATACAGAACAAGGGCAACTGGAATACCTCCGGCGTCAGCAATGGACTCAATGGGTCA
TCGACCATCGGCACGCCCGGCAGTACCAGCACCAACTCACCGTTCGTCGACATGGGCGTAGCCAACAACACCTCGGGAAT
CGGCATCGCGTTCATCACCGATAACGTCTTGCTGGACCTGGAGCTGACGGCCATGGAGAAAACCGGTAACGGGGAAATCG
TCTCACAGCCCAAGGTGGTCACGTCTGACAAGGAAACCGCGAAAATCCTCAAGGGCACCGAGATTCCCTATCAGGAGGCC
AGTTCCAGCGGCGCGACTTCGGTGTCGTTCAAGGAGGCTTCGCTGTCGCTGGAGGTGACGCCGCAGATCACGCCCGACAA
TCGGATCATTATGGAGGTCAAGGTCACCAAGGACGAACCGGACTTCCTGAACAAGGTCCAGGATGTACCGCCCATCAAGA
AAAACGAAGTCAACGCCAAGGTCCTGGTCAACGATGGCGAGACCATCGTCATTGGCGGTGTTTTCTCAAATACTCAGAGC
AAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTCGGAGAA
AAAATCCGAGCTGTTGGTATTCCTCACTCCGCGTATCATGAATAATCAGGCGATTGCTGTGAGTCATTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(297-343)

Bacterial type II/III secretion system short domain (Secretin_N)

(371-436)

Bacterial type II and III secretion system protein (Secretin)

(524-680)

AMIN domain (AMIN)

(38-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.049

100

0.737
  pilQ Acinetobacter baumannii D1279779

38.318

100

0.417
  pilQ Acinetobacter baumannii strain A118

38.318

100

0.417
  comQ Acinetobacter baylyi ADP1

41.159

100

0.412
  pilQ Legionella pneumophila strain Lp02

38.667

97.968

0.379
  pilQ Legionella pneumophila strain ERS1305867

38.519

97.968

0.377