Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WHX55_RS01900 Genome accession   NZ_CP148752
Coordinates   421729..422793 (+) Length   354 a.a.
NCBI ID   WP_353741923.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416729..427793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS01890 (WHX55_01890) - 417570..418838 (+) 1269 WP_056725708.1 malic enzyme-like NAD(P)-binding protein -
  WHX55_RS01895 (WHX55_01895) - 419073..421514 (-) 2442 WP_150754721.1 penicillin-binding protein 1A -
  WHX55_RS01900 (WHX55_01900) comM 421729..422793 (+) 1065 WP_353741923.1 pilus assembly protein PilM Machinery gene
  WHX55_RS01905 (WHX55_01905) - 422793..423359 (+) 567 WP_150756786.1 PilN domain-containing protein -
  WHX55_RS01910 (WHX55_01910) pilO 423356..423979 (+) 624 WP_150756785.1 type 4a pilus biogenesis protein PilO -
  WHX55_RS01915 (WHX55_01915) - 423976..424503 (+) 528 WP_353741924.1 pilus assembly protein PilP -
  WHX55_RS01920 (WHX55_01920) pilQ 424517..426586 (+) 2070 WP_353741925.1 type IV pilus secretin PilQ Machinery gene
  WHX55_RS01925 (WHX55_01925) aroK 426591..427109 (+) 519 WP_045061936.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37915.40 Da        Isoelectric Point: 4.6354

>NTDB_id=955441 WHX55_RS01900 WP_353741923.1 421729..422793(+) (comM) [Pseudomonas fluorescens strain AB1]
MLGLFNKKSNTLLGIDISSTSVKLLELSRQGERFRVEAYAVEPLPVGAVIEKNIAELEGVGLALARALAKARTGLKNVAV
AVAGSAVITKTIEMDAGLSEDEMESQLKIEADQYIPYPLDEVAIDFEVQGTSGRNSERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFELLVSRLAVSGESSTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAQKKGGLPDDYAAEVLQPFREALVQQVSRSLQFFFASGQYSAVDHVLLAGGTASIPGLDRLIEQQLGTPTQVANP
FCEMTLGSKVNSAALASDAPALMIVCGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=955441 WHX55_RS01900 WP_353741923.1 421729..422793(+) (comM) [Pseudomonas fluorescens strain AB1]
GTGCTAGGACTCTTCAACAAAAAATCCAATACGCTCCTGGGAATCGACATCAGCTCTACCTCGGTGAAACTTCTTGAGTT
GAGCCGTCAGGGTGAGCGTTTTCGAGTTGAGGCCTATGCGGTCGAGCCGTTGCCGGTCGGCGCGGTGATCGAAAAGAATA
TCGCTGAGCTTGAAGGCGTGGGGCTGGCCCTCGCGCGCGCGCTGGCCAAGGCCAGAACCGGCCTCAAGAACGTGGCCGTG
GCCGTGGCGGGCTCAGCGGTGATCACCAAGACCATCGAGATGGATGCCGGTCTTTCCGAGGACGAGATGGAAAGCCAGTT
GAAGATCGAGGCTGATCAGTACATTCCTTATCCCCTGGACGAAGTCGCGATCGACTTTGAAGTCCAGGGCACCTCCGGGC
GCAATTCGGAGCGCGTCAACGTGCTGCTCGCCGCTTGTCGCAAGGAAAACGTCGAAGTCCGCGAGGCCGCCCTGGCCCTG
GCGGGGCTGACCGCCCGCGTGGTTGATGTGGAGGCCTACGCGCTGGAGCGTTCATTCGAATTGCTGGTCAGTCGGCTCGC
GGTTTCCGGGGAGTCTTCGACGGTCGCAGTGGTGGACATCGGCGCCACCATGACCACCCTGAGCGTGCTGCACAACGGGC
GGATTATCTACACCCGCGAACAACTGTTCGGCGGTCGGCAGTTGACCGAAGAAATCCAGCGACGCTATGGCCTGACGCTG
GAGCAGGCGGGGCTGGCGCAAAAGAAGGGCGGTCTGCCGGATGACTATGCCGCTGAGGTCTTGCAGCCATTTCGAGAGGC
GCTTGTGCAGCAGGTGTCGCGCTCGTTGCAATTCTTCTTTGCCTCAGGCCAATACAGCGCCGTTGACCATGTCCTGCTGG
CCGGCGGTACCGCGTCGATCCCGGGGCTGGACCGTTTGATCGAGCAGCAATTGGGTACGCCGACCCAGGTCGCGAATCCT
TTTTGCGAAATGACTCTGGGCAGCAAGGTCAATAGTGCTGCCCTGGCGAGTGATGCCCCGGCGTTGATGATCGTCTGTGG
TTTGGCCCTCAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

54.802

100

0.548
  pilM Acinetobacter baumannii D1279779

54.52

100

0.545
  comM Acinetobacter baylyi ADP1

52.26

100

0.523
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475