Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   QML92_RS10425 Genome accession   NZ_AP025937
Coordinates   2044627..2045808 (+) Length   393 a.a.
NCBI ID   WP_000681598.1    Uniprot ID   A0A0B7M448
Organism   Streptococcus pneumoniae strain PZ900700792     
Function   degrading CSP; selective degradation of ComEA and ComEC (predicted from homology)   
Competence regulation

Genomic Context


Location: 2039627..2050808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML92_RS10385 (PC0780_20190) - 2040678..2041220 (+) 543 WP_001158263.1 TetR/AcrR family transcriptional regulator -
  QML92_RS10400 (PC0780_20200) comE 2041463..2042215 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  QML92_RS10405 (PC0780_20210) comD/comD2 2042212..2043537 (-) 1326 WP_001842237.1 competence system sensor histidine kinase ComD Regulator
  QML92_RS10410 comC/comC2 2043558..2043683 (-) 126 WP_000799686.1 competence-stimulating peptide ComC Regulator
  QML92_RS10420 (PC0780_20220) rlmH 2043965..2044444 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  QML92_RS10425 (PC0780_20230) htrA 2044627..2045808 (+) 1182 WP_000681598.1 S1C family serine protease Regulator
  QML92_RS10430 (PC0780_20240) spo0J 2045866..2046624 (+) 759 WP_000410380.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41827.69 Da        Isoelectric Point: 6.8902

>NTDB_id=95326 QML92_RS10425 WP_000681598.1 2044627..2045808(+) (htrA) [Streptococcus pneumoniae strain PZ900700792]
MKHLKTFYKKWFQLLVVIVISFFSGALGSFSITQLTQKSSVNNSNNNSTITQTAYKNENSTTQAVNKVKDAVVSVITYSA
NRQNSVFGNDDTDTDSQRISSEGSGVIYKKNDKEAYIVTNNHVINGASKVDIRLSDGTKVPGEIVGADTFSDIAVVKISS
EKVTTVAEFGDSSKLTVGETAIAIGSPLGSEYANTVTQGIVSSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKIATNGGTSVEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVV
VRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNKSSGDLES

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=95326 QML92_RS10425 WP_000681598.1 2044627..2045808(+) (htrA) [Streptococcus pneumoniae strain PZ900700792]
ATGAAACATCTAAAAACATTTTACAAAAAATGGTTTCAATTATTAGTCGTTATCGTCATTAGCTTTTTTAGTGGAGCCTT
GGGTAGTTTTTCAATAACTCAACTAACTCAAAAAAGTAGTGTAAACAACTCTAACAACAATAGTACTATTACACAAACTG
CCTATAAGAACGAAAATTCAACAACACAGGCTGTTAACAAAGTAAAAGATGCTGTTGTTTCTGTTATTACTTATTCGGCA
AACAGACAAAATAGCGTATTTGGCAATGATGATACTGACACAGATTCTCAGCGAATCTCTAGTGAAGGATCTGGAGTTAT
TTATAAAAAGAATGATAAAGAAGCTTACATCGTCACCAACAATCACGTTATAAATGGCGCCAGCAAAGTAGATATTCGAT
TGTCAGATGGGACTAAAGTACCTGGAGAAATTGTCGGAGCTGACACTTTCTCTGATATTGCTGTCGTAAAAATCTCTTCA
GAAAAAGTGACAACAGTAGCTGAGTTTGGTGATTCTAGTAAGTTAACTGTAGGAGAAACTGCTATTGCCATCGGTAGCCC
GTTAGGTTCTGAATATGCAAATACTGTAACTCAAGGTATCGTATCCAGTCTCAATAGAAATGTATCCTTAAAATCGGAAG
ATGGACAAGCTATTTCTACAAAAGCCATCCAAACTGATACTGCTATTAACCCAGGTAACTCTGGCGGCCCACTGATCAAT
ATTCAAGGGCAGGTTATCGGAATTACCTCAAGTAAAATTGCTACAAATGGAGGAACATCTGTAGAAGGTCTTGGTTTCGC
AATTCCTGCAAATGATGCTATCAATATTATTGAACAGTTAGAAAAAAACGGAAAAGTGACGCGTCCAGCTTTGGGAATCC
AGATGGTTAATTTATCTAATGTGAGTACAAGCGACATCAGAAGACTCAATATTCCAAGTAATGTTACATCTGGTGTAGTT
GTTCGTTCGGTACAAAGTAATATGCCTGCCAATGGTCACCTTGAAAAATACGATGTAATTACAAAAGTAGATGACAAAGA
GATTGCTTCATCAACAGACTTACAAAGTGCTCTTTACAACCATTCTATCGGAGACACCATTAAGATAACCTACTATCGTA
ACGGGAAAGAAGAAACTACCTCTATCAAACTTAACAAGAGTTCAGGTGATTTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7M448

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus pneumoniae Rx1

99.746

100

0.997

  htrA Streptococcus pneumoniae D39

99.746

100

0.997

  htrA Streptococcus pneumoniae R6

99.746

100

0.997

  htrA Streptococcus pneumoniae TIGR4

99.746

100

0.997

  htrA Streptococcus mitis NCTC 12261

97.455

100

0.975

  htrA Streptococcus gordonii str. Challis substr. CH1

66.667

100

0.672

  htrA Streptococcus mutans UA159

54.822

100

0.55


Multiple sequence alignment