Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   WHO69_RS04405 Genome accession   NZ_CP148108
Coordinates   954082..954366 (+) Length   94 a.a.
NCBI ID   WP_031779272.1    Uniprot ID   A0AAN0Y541
Organism   Vibrio natriegens isolate FELIX_MS472     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 949082..959366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO69_RS04395 - 951559..951831 (+) 273 WP_014231223.1 HU family DNA-binding protein -
  WHO69_RS04400 ppiD 952035..953894 (+) 1860 WP_020336144.1 peptidylprolyl isomerase -
  WHO69_RS04405 comEA 954082..954366 (+) 285 WP_031779272.1 ComEA family DNA-binding protein Machinery gene
  WHO69_RS04410 rrtA 954449..955000 (-) 552 WP_020336146.1 rhombosortase -
  WHO69_RS04415 - 955004..955627 (+) 624 WP_020336147.1 DTW domain-containing protein -
  WHO69_RS04420 - 955624..956946 (-) 1323 WP_020336148.1 anti-phage deoxyguanosine triphosphatase -
  WHO69_RS04425 yfbR 956970..957554 (-) 585 WP_014231229.1 5'-deoxynucleotidase -
  WHO69_RS04430 - 957645..958859 (-) 1215 WP_014231230.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10182.78 Da        Isoelectric Point: 5.0914

>NTDB_id=950672 WHO69_RS04405 WP_031779272.1 954082..954366(+) (comEA) [Vibrio natriegens isolate FELIX_MS472]
MKWVLTLLLCVFAPFGLAADTTADKYEGIEITVNINSATAEEIATMLKGIGEKKAQDIVDYRTEHGPFKTVSDLGNVKGI
GDATLKKNEGRIIL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=950672 WHO69_RS04405 WP_031779272.1 954082..954366(+) (comEA) [Vibrio natriegens isolate FELIX_MS472]
ATGAAATGGGTTTTAACTTTATTGTTATGCGTATTTGCACCGTTTGGGTTGGCAGCAGATACAACAGCGGATAAATATGA
AGGAATTGAAATTACCGTAAACATCAATTCAGCGACAGCAGAAGAGATTGCAACAATGCTGAAAGGGATTGGTGAAAAGA
AAGCGCAAGATATTGTCGATTATCGTACCGAGCATGGCCCATTTAAAACAGTGAGTGACCTGGGGAATGTTAAGGGAATC
GGAGATGCTACTTTGAAGAAAAACGAAGGTCGCATCATCCTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

82.979

100

0.83
  comEA Vibrio campbellii strain DS40M4

71.579

100

0.723
  comEA Vibrio cholerae strain A1552

57.447

100

0.574
  comEA Vibrio cholerae C6706

57.447

100

0.574
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comEA Acinetobacter baylyi ADP1

50.746

71.277

0.362