Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WHL98_RS17215 Genome accession   NZ_CP148104
Coordinates   3253656..3254300 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3248656..3259300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS17180 mrpB 3249848..3250279 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  WHL98_RS17185 mrpC 3250279..3250620 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  WHL98_RS17190 mrpD 3250613..3252094 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  WHL98_RS17195 mrpE 3252100..3252576 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  WHL98_RS17200 mrpF 3252576..3252860 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  WHL98_RS17205 mnhG 3252844..3253218 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  WHL98_RS17210 yuxO 3253257..3253637 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  WHL98_RS17215 comA 3253656..3254300 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  WHL98_RS17220 comP 3254381..3256690 (-) 2310 WP_032723438.1 two-component system sensor histidine kinase ComP Regulator
  WHL98_RS17225 comX 3256705..3256872 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  WHL98_RS17230 comQ 3256860..3257759 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  WHL98_RS17235 degQ 3257944..3258084 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  WHL98_RS17240 - 3258306..3258431 (+) 126 WP_003228793.1 hypothetical protein -
  WHL98_RS17245 - 3258545..3258913 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=950623 WHL98_RS17215 WP_003220716.1 3253656..3254300(-) (comA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=950623 WHL98_RS17215 WP_003220716.1 3253656..3254300(-) (comA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1