Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACG3JM_RS04885 Genome accession   NZ_CP171735
Coordinates   968075..968599 (-) Length   174 a.a.
NCBI ID   WP_394714059.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M11     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 963075..973599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JM_RS04870 (ACG3JM_04870) sodA 964055..964663 (-) 609 WP_003102930.1 superoxide dismutase SodA -
  ACG3JM_RS04875 (ACG3JM_04875) holA 964773..965801 (-) 1029 WP_003104123.1 DNA polymerase III subunit delta -
  ACG3JM_RS04880 (ACG3JM_04880) comEC/celB 965848..968082 (-) 2235 WP_238570157.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACG3JM_RS04885 (ACG3JM_04885) comEA 968075..968599 (-) 525 WP_394714059.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACG3JM_RS04890 (ACG3JM_04890) - 968813..969553 (-) 741 WP_013794141.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ACG3JM_RS04895 (ACG3JM_04895) - 969693..970463 (+) 771 WP_013794142.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACG3JM_RS04900 (ACG3JM_04900) - 970453..970737 (+) 285 WP_003108195.1 GIY-YIG nuclease family protein -
  ACG3JM_RS04905 (ACG3JM_04905) - 970751..972748 (-) 1998 WP_013794143.1 KUP/HAK/KT family potassium transporter -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18972.53 Da        Isoelectric Point: 4.9650

>NTDB_id=948738 ACG3JM_RS04885 WP_394714059.1 968075..968599(-) (comEA) [Streptococcus parauberis strain DB-M11]
MIELRKEIIEVKEDKEQSQAESKSTDTSNQIMVDLKGAVKQEGVYKLPADSRVTDLVKMAGGLTQDADRQAINLAQKLSD
ASIIYIARLGENKSVLPSSTVQAADAPSDDEKININSATSDQLTKIPGIGEKRAHEIIEARDKMGGFKSLEDLTKISGIG
KKTLEKMKDNLSIE

Nucleotide


Download         Length: 525 bp        

>NTDB_id=948738 ACG3JM_RS04885 WP_394714059.1 968075..968599(-) (comEA) [Streptococcus parauberis strain DB-M11]
ATGATTGAATTAAGAAAAGAAATTATAGAAGTTAAAGAAGACAAGGAGCAGAGCCAAGCAGAATCAAAGTCGACTGATAC
AAGTAACCAAATTATGGTTGATTTGAAAGGGGCTGTTAAGCAAGAGGGGGTCTATAAGTTACCAGCAGATAGTCGAGTGA
CTGATTTGGTCAAAATGGCCGGTGGGCTGACTCAAGATGCTGACAGGCAAGCCATCAATCTCGCTCAAAAATTATCCGAT
GCATCTATTATTTATATTGCAAGATTGGGTGAGAATAAATCAGTTTTACCCTCATCGACAGTCCAAGCTGCAGACGCACC
TAGTGATGATGAAAAGATTAATATAAATAGTGCGACAAGTGATCAACTAACTAAAATTCCAGGGATTGGCGAAAAACGAG
CGCATGAAATTATCGAAGCTAGAGATAAAATGGGTGGCTTCAAAAGTCTGGAAGATTTAACCAAAATTTCTGGCATTGGT
AAGAAAACACTTGAAAAAATGAAAGATAATTTAAGTATTGAATAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(32-85)

Helix-hairpin-helix motif (HHH_3)

(111-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

50

86.207

0.431
  comEA Lactococcus lactis subsp. cremoris KW2

47.02

86.782

0.408
  comEA/celA/cilE Streptococcus mitis SK321

46.667

86.207

0.402
  comEA/celA/cilE Streptococcus mitis NCTC 12261

45.27

85.057

0.385
  comEA/celA/cilE Streptococcus pneumoniae R6

45.833

82.759

0.379
  comEA/celA/cilE Streptococcus pneumoniae Rx1

45.833

82.759

0.379
  comEA/celA/cilE Streptococcus pneumoniae D39

45.833

82.759

0.379
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

45.833

82.759

0.379
  comEA Latilactobacillus sakei subsp. sakei 23K

39.264

93.678

0.368