Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACG3JJ_RS05405 Genome accession   NZ_CP171733
Coordinates   1048386..1049063 (+) Length   225 a.a.
NCBI ID   WP_013794140.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M5     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1043386..1054063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JJ_RS05385 (ACG3JJ_05385) - 1044391..1046388 (+) 1998 WP_013794143.1 KUP/HAK/KT family potassium transporter -
  ACG3JJ_RS05390 (ACG3JJ_05390) - 1046402..1046686 (-) 285 WP_003108195.1 GIY-YIG nuclease family protein -
  ACG3JJ_RS05395 (ACG3JJ_05395) - 1046676..1047446 (-) 771 WP_013794142.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACG3JJ_RS05400 (ACG3JJ_05400) - 1047586..1048326 (+) 741 WP_013794141.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ACG3JJ_RS05405 (ACG3JJ_05405) comEA 1048386..1049063 (+) 678 WP_013794140.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACG3JJ_RS05410 (ACG3JJ_05410) comEC/celB 1049056..1051290 (+) 2235 WP_238570157.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACG3JJ_RS05415 (ACG3JJ_05415) holA 1051337..1052365 (+) 1029 WP_003104123.1 DNA polymerase III subunit delta -
  ACG3JJ_RS05420 (ACG3JJ_05420) sodA 1052475..1053083 (+) 609 WP_003102930.1 superoxide dismutase SodA -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24916.60 Da        Isoelectric Point: 5.0449

>NTDB_id=948549 ACG3JJ_RS05405 WP_013794140.1 1048386..1049063(+) (comEA) [Streptococcus parauberis strain DB-M5]
MKEILTDIKQWYVNHYILGRIIVIIVCICLLFSLSLFVFGNSTADKQKEEDMIELRKEIIEVKEDKEQSQAESKSTDTSN
QIMVDLKGAVKQEGVYKLPADSRVTDLVKMAGGLTQDADRQAINLAQKLSDASIIYIARLGENKSVLPSSTVQAADAPSD
DEKININSATSDQLTKIPGIGEKRAHEIIEARDKMGGFKSLEDLTKISGIGKKTLEKMKDNLSIE

Nucleotide


Download         Length: 678 bp        

>NTDB_id=948549 ACG3JJ_RS05405 WP_013794140.1 1048386..1049063(+) (comEA) [Streptococcus parauberis strain DB-M5]
ATGAAAGAAATTCTAACAGATATAAAACAGTGGTATGTTAATCACTATATTCTAGGCAGAATCATCGTAATTATTGTTTG
TATTTGTCTTCTTTTTTCTCTATCTCTTTTTGTTTTTGGGAATAGCACAGCCGATAAACAAAAAGAAGAAGACATGATTG
AATTAAGAAAAGAAATTATAGAAGTTAAAGAAGACAAGGAGCAGAGCCAAGCAGAATCAAAGTCGACTGATACAAGTAAC
CAAATTATGGTTGATTTGAAAGGGGCTGTTAAGCAAGAGGGGGTCTATAAGTTACCAGCAGATAGTCGAGTGACTGATTT
GGTCAAAATGGCCGGTGGGCTGACTCAAGATGCTGACAGGCAAGCCATCAATCTCGCTCAAAAATTATCCGATGCATCTA
TTATTTATATTGCAAGATTGGGTGAGAATAAATCAGTTTTACCCTCATCGACAGTCCAAGCTGCAGACGCACCTAGTGAT
GATGAAAAGATTAATATAAATAGTGCGACAAGTGATCAACTAACTAAAATTCCAGGGATTGGCGAAAAACGAGCGCATGA
AATTATCGAAGCTAGAGATAAAATGGGTGGCTTCAAAAGTCTGGAAGATTTAACCAAAATTTCTGGCATTGGTAAGAAAA
CACTTGAAAAAATGAAAGATAATTTAAGTATTGAATAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(83-136)

Helix-hairpin-helix motif (HHH_3)

(162-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

39.744

100

0.413
  comEA/celA/cilE Streptococcus pneumoniae R6

37.555

100

0.382
  comEA/celA/cilE Streptococcus pneumoniae Rx1

37.555

100

0.382
  comEA/celA/cilE Streptococcus pneumoniae D39

37.555

100

0.382
  comEA Lactococcus lactis subsp. cremoris KW2

36.957

100

0.378
  comEA/celA/cilE Streptococcus mitis NCTC 12261

36.481

100

0.378
  comEA/celA/cilE Streptococcus mitis SK321

36.681

100

0.373
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

36.681

100

0.373