NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	WBM82_RS18540	Genome accession	NZ_CP147494
Coordinates	3490902..3491495 (+)	Length	197 a.a.
NCBI ID	WP_003228214.1	Uniprot ID	A0A199WEF2
Organism	Bacillus subtilis strain YT1
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3485902..3496495

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WBM82_RS18510 (WBM82_18560)	psmA	3486157..3486492 (+)	336	WP_014480966.1	SMR family transporter	-
WBM82_RS18515 (WBM82_18565)	psmB	3486492..3486812 (+)	321	WP_003228222.1	QacE family quaternary ammonium compound efflux SMR transporter	-
WBM82_RS18520 (WBM82_18570)	yvdQ	3486848..3487360 (-)	513	WP_003243249.1	DUF3231 family protein	-
WBM82_RS18525 (WBM82_18575)	cotNP	3487612..3488955 (-)	1344	WP_029725961.1	FAD-binding oxidoreductase	-
WBM82_RS18530 (WBM82_18580)	cotR	3489311..3490273 (+)	963	WP_015251166.1	sporulation hydrolase CotR	-
WBM82_RS18540 (WBM82_18590)	clpP	3490902..3491495 (+)	594	WP_003228214.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
WBM82_RS18545 (WBM82_18595)	pgmB	3491541..3492221 (-)	681	WP_029318355.1	beta-phosphoglucomutase	-
WBM82_RS18550 (WBM82_18600)	malL	3492218..3493903 (-)	1686	WP_029318354.1	oligo-1,6-glucosidase	-
WBM82_RS18555 (WBM82_18605)	mdxK	3493896..3496169 (-)	2274	WP_029318353.1	maltose phosphorylase	-

Sequence

Protein

Download Length: 197 a.a. Molecular weight: 21682.00 Da Isoelectric Point: 4.9416

                                >NTDB_id=946449 WBM82_RS18540 WP_003228214.1 3490902..3491495(+) (clpP) [Bacillus subtilis strain YT1]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDKK

Nucleotide

Download Length: 594 bp

                                >NTDB_id=946449 WBM82_RS18540 WP_003228214.1 3490902..3491495(+) (clpP) [Bacillus subtilis strain YT1]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA

TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG

AAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC

ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCCTGCTTGCAGCCGG

CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAGGCGA

CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG

CCGCTTGAAGTGATCGAACGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA

CAAAATTTTGACTCACACAGAAGATAAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A199WEF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	100	100	1
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.617	95.431	0.655
clpP	Streptococcus thermophilus LMG 18311	58.163	99.492	0.579
clpP	Streptococcus thermophilus LMD-9	58.163	99.492	0.579
clpP	Streptococcus pneumoniae D39	57.812	97.462	0.563
clpP	Streptococcus pneumoniae Rx1	57.812	97.462	0.563
clpP	Streptococcus pneumoniae R6	57.812	97.462	0.563
clpP	Streptococcus pneumoniae TIGR4	57.812	97.462	0.563
clpP	Lactococcus lactis subsp. cremoris KW2	57.895	96.447	0.558
clpP	Streptococcus pyogenes JRS4	56.122	99.492	0.558
clpP	Streptococcus pyogenes MGAS315	56.122	99.492	0.558
clpP	Streptococcus mutans UA159	54.822	100	0.548
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.789	96.447	0.538

Detailed information NTG0946449