Detailed information NTG0945324

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: WAA16_RS16575
• Genome accession: NZ_CP146984
• Coordinates: 3210125..3210811 (-)
• Length: 228 a.a.
• NCBI ID: WP_189288297.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain S9
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3205125..3215811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAA16_RS16540 (WAA16_16540)	fliW	3205258..3205692 (-)	435	WP_034660142.1	flagellar assembly protein FliW	-
WAA16_RS16545 (WAA16_16545)	-	3205721..3206299 (-)	579	WP_034660143.1	DUF6470 family protein	-
WAA16_RS16550 (WAA16_16550)	flgL	3206348..3207259 (-)	912	WP_066031682.1	flagellar hook-associated protein FlgL	-
WAA16_RS16555 (WAA16_16555)	flgK	3207269..3208789 (-)	1521	WP_060597394.1	flagellar hook-associated protein FlgK	-
WAA16_RS16560 (WAA16_16560)	-	3208805..3209287 (-)	483	WP_034660146.1	flagellar protein FlgN	-
WAA16_RS16565 (WAA16_16565)	flgM	3209306..3209569 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
WAA16_RS16570 (WAA16_16570)	-	3209649..3210068 (-)	420	WP_060597396.1	TIGR03826 family flagellar region protein	-
WAA16_RS16575 (WAA16_16575)	comFC	3210125..3210811 (-)	687	WP_189288297.1	ComF family protein	Machinery gene
WAA16_RS16580 (WAA16_16580)	-	3210808..3211101 (-)	294	WP_060597398.1	competence protein ComFB	-
WAA16_RS16585 (WAA16_16585)	comFA	3211168..3212547 (-)	1380	WP_275718497.1	DEAD/DEAH box helicase	Machinery gene
WAA16_RS16590 (WAA16_16590)	-	3212668..3213510 (-)	843	WP_034660152.1	DegV family protein	-
WAA16_RS16595 (WAA16_16595)	degU	3213728..3214417 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
WAA16_RS16600 (WAA16_16600)	degS	3214482..3215657 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26048.47 Da
• Isoelectric Point: 9.9327

>NTDB_id=945324 WAA16_RS16575 WP_189288297.1 3210125..3210811(-) (comFC) [Bacillus pumilus strain S9]
MICLICEGHFVAAFTWKSLLLLNDDHLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKKKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=945324 WAA16_RS16575 WP_189288297.1 3210125..3210811(-) (comFC) [Bacillus pumilus strain S9]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (156-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395