Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   WAA16_RS16585 Genome accession   NZ_CP146984
Coordinates   3211168..3212547 (-) Length   459 a.a.
NCBI ID   WP_275718497.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3206168..3217547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS16550 (WAA16_16550) flgL 3206348..3207259 (-) 912 WP_066031682.1 flagellar hook-associated protein FlgL -
  WAA16_RS16555 (WAA16_16555) flgK 3207269..3208789 (-) 1521 WP_060597394.1 flagellar hook-associated protein FlgK -
  WAA16_RS16560 (WAA16_16560) - 3208805..3209287 (-) 483 WP_034660146.1 flagellar protein FlgN -
  WAA16_RS16565 (WAA16_16565) flgM 3209306..3209569 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  WAA16_RS16570 (WAA16_16570) - 3209649..3210068 (-) 420 WP_060597396.1 TIGR03826 family flagellar region protein -
  WAA16_RS16575 (WAA16_16575) comFC 3210125..3210811 (-) 687 WP_189288297.1 ComF family protein Machinery gene
  WAA16_RS16580 (WAA16_16580) - 3210808..3211101 (-) 294 WP_060597398.1 competence protein ComFB -
  WAA16_RS16585 (WAA16_16585) comFA 3211168..3212547 (-) 1380 WP_275718497.1 DEAD/DEAH box helicase Machinery gene
  WAA16_RS16590 (WAA16_16590) - 3212668..3213510 (-) 843 WP_034660152.1 DegV family protein -
  WAA16_RS16595 (WAA16_16595) degU 3213728..3214417 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  WAA16_RS16600 (WAA16_16600) degS 3214482..3215657 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  WAA16_RS16605 (WAA16_16605) - 3215879..3216547 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52664.82 Da        Isoelectric Point: 10.2128

>NTDB_id=945325 WAA16_RS16585 WP_275718497.1 3211168..3212547(-) (comFA) [Bacillus pumilus strain S9]
MNMDKAMELRQQLQSRHLLTAETRCSQSDLDWLEEKGLVIRTPAIERKANGLTCCRCGVSKKRYFAHTPCDMCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIEAIKNKFDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKITVLYGGSPQRFQIAPLVIATTHQLMRYKLAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMKRDVSRGQLEAIKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRILLFVPSISTMKKITKVLREHRLNVEGVSADDPDRKQKVQHFRDYKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVIFFHFGLTRSMKQAKKHIVKMNDTAAKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=945325 WAA16_RS16585 WP_275718497.1 3211168..3212547(-) (comFA) [Bacillus pumilus strain S9]
TTGAACATGGACAAAGCAATGGAACTAAGGCAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTCACA
GTCCGATTTGGATTGGCTGGAGGAGAAAGGGTTAGTCATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTACTT
GCTGTAGATGTGGTGTATCAAAAAAGCGGTACTTTGCCCACACTCCGTGTGACATGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAACATG
TCATACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGGGCGTCAGAAAAATTGATCGAAGCGATAAAAA
ACAAATTTGATCTACTCATTTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATTGAATATGCCTTA
CATCAAGGAATGAGCGTCTGCATTGCGACACCTAGAACAGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCATT
TCAAGGAATGAAAATAACTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTGATCGCCACAACTC
ATCAGTTGATGAGATACAAACTTGCATTTGATGTGCTTATTATAGATGAAGTCGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCCTCTAAGAAAAT
GAAAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACCAACAACCGTTACCTGTCCCGT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAACCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATCACAAAGAAGAGAAGGATTTTACTTTTTGTTCCTTCTATTTCGACCATGAAGAAGATAACGAAGGTCCTTAGAGA
ACACCGCTTAAATGTGGAGGGGGTGTCTGCTGATGATCCAGACAGGAAACAAAAGGTCCAGCACTTCAGAGATTATAAAT
ACGATGTACTAGTTACAACCACCATTCTAGAAAGAGGCGTTACCATTCCAAATGTTCAAGTGGGGGTACTAGGTGCGGAA
TCTACTATCTTTACAGAGAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TATCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACAGCTGCAA
AAGAGTTTTCTGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.084

98.693

0.534