Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   WAA16_RS16170 Genome accession   NZ_CP146984
Coordinates   3129077..3129673 (+) Length   198 a.a.
NCBI ID   WP_034660066.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3124077..3134673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS16150 (WAA16_16150) nikA 3124395..3126026 (-) 1632 WP_066030337.1 nickel ABC transporter substrate-binding protein -
  WAA16_RS16155 (WAA16_16155) - 3126149..3127318 (-) 1170 WP_066030336.1 macrolide family glycosyltransferase -
  WAA16_RS16160 (WAA16_16160) - 3127487..3128377 (-) 891 WP_223251083.1 ABC transporter substrate-binding protein -
  WAA16_RS16170 (WAA16_16170) clpP 3129077..3129673 (+) 597 WP_034660066.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  WAA16_RS16175 (WAA16_16175) - 3129733..3130311 (-) 579 WP_034660067.1 TIGR00730 family Rossman fold protein -
  WAA16_RS16180 (WAA16_16180) - 3130448..3130789 (+) 342 WP_034660068.1 MazG-like family protein -
  WAA16_RS16185 (WAA16_16185) - 3130818..3132440 (-) 1623 WP_060597350.1 SulP family inorganic anion transporter -
  WAA16_RS16190 (WAA16_16190) - 3132478..3133059 (-) 582 WP_060597724.1 carbonic anhydrase -
  WAA16_RS16195 (WAA16_16195) - 3133613..3134590 (+) 978 WP_338712196.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21832.99 Da        Isoelectric Point: 4.6141

>NTDB_id=945323 WAA16_RS16170 WP_034660066.1 3129077..3129673(+) (clpP) [Bacillus pumilus strain S9]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=945323 WAA16_RS16170 WP_034660066.1 3129077..3129673(+) (clpP) [Bacillus pumilus strain S9]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTAATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTGAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.893

99.495

0.924
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pneumoniae D39

56.701

97.98

0.556
  clpP Streptococcus pneumoniae Rx1

56.701

97.98

0.556
  clpP Streptococcus pneumoniae R6

56.701

97.98

0.556
  clpP Streptococcus pneumoniae TIGR4

56.701

97.98

0.556
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

97.98

0.54
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535