NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	V9W61_RS16385	Genome accession	NZ_CP146761
Coordinates	3154545..3155141 (+)	Length	198 a.a.
NCBI ID	WP_024719872.1	Uniprot ID	A0A2G8ISB7
Organism	Bacillus altitudinis strain JJ1138
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3149545..3160141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V9W61_RS16365 (V9W61_16365)	abc-f	3149971..3151530 (-)	1560	WP_335352571.1	ABC-F type ribosomal protection protein	-
V9W61_RS16370 (V9W61_16370)	-	3151927..3153093 (-)	1167	WP_338705808.1	macrolide family glycosyltransferase	-
V9W61_RS16375 (V9W61_16375)	-	3153458..3153922 (-)	465	WP_058336952.1	DinB family protein	-
V9W61_RS16385 (V9W61_16385)	clpP	3154545..3155141 (+)	597	WP_024719872.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
V9W61_RS16390 (V9W61_16390)	-	3155197..3155775 (-)	579	WP_024719873.1	TIGR00730 family Rossman fold protein	-
V9W61_RS16395 (V9W61_16395)	-	3155912..3156253 (+)	342	WP_017368102.1	MazG-like family protein	-
V9W61_RS16400 (V9W61_16400)	-	3156283..3157905 (-)	1623	WP_025208022.1	SulP family inorganic anion transporter	-
V9W61_RS16405 (V9W61_16405)	-	3157943..3158524 (-)	582	WP_025208023.1	carbonic anhydrase	-
V9W61_RS16410 (V9W61_16410)	-	3159088..3160065 (+)	978	WP_061420932.1	D-glycerate dehydrogenase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21832.00 Da Isoelectric Point: 4.6905

                                >NTDB_id=944399 V9W61_RS16385 WP_024719872.1 3154545..3155141(+) (clpP) [Bacillus altitudinis strain JJ1138]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ

PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNSEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=944399 V9W61_RS16385 WP_024719872.1 3154545..3155141(+) (clpP) [Bacillus altitudinis strain JJ1138]

ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA

CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTATCACAGCTTCTCTTCTTAGAAGCCG

AGGATCCAGAAAAAGATATCTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG

ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG

TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA

CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG

CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA

CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2G8ISB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	92.929	100	0.929
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.539	96.465	0.652
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Lactococcus lactis subsp. cremoris KW2	56.701	97.98	0.556
clpP	Streptococcus pneumoniae Rx1	56.186	97.98	0.551
clpP	Streptococcus pneumoniae D39	56.186	97.98	0.551
clpP	Streptococcus pneumoniae R6	56.186	97.98	0.551
clpP	Streptococcus pneumoniae TIGR4	56.186	97.98	0.551
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.639	97.98	0.535

Detailed information NTG0944399