Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V6986_RS15780 Genome accession   NZ_CP146358
Coordinates   3088080..3088676 (+) Length   198 a.a.
NCBI ID   WP_024427684.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083080..3093676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS15760 (V6986_15760) - 3084444..3085613 (-) 1170 WP_338592881.1 macrolide family glycosyltransferase -
  V6986_RS15765 (V6986_15765) - 3085782..3086672 (-) 891 WP_047203877.1 ABC transporter substrate-binding protein -
  V6986_RS15770 (V6986_15770) - 3086970..3087434 (-) 465 WP_338592883.1 DinB family protein -
  V6986_RS15780 (V6986_15780) clpP 3088080..3088676 (+) 597 WP_024427684.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  V6986_RS15785 (V6986_15785) - 3088737..3089315 (-) 579 WP_041088147.1 TIGR00730 family Rossman fold protein -
  V6986_RS15790 (V6986_15790) - 3089449..3089790 (+) 342 WP_338592886.1 MazG-like family protein -
  V6986_RS15795 (V6986_15795) - 3089817..3091439 (-) 1623 WP_047203861.1 SulP family inorganic anion transporter -
  V6986_RS15800 (V6986_15800) - 3091477..3092058 (-) 582 WP_064498141.1 carbonic anhydrase -
  V6986_RS15805 (V6986_15805) - 3092611..3093588 (+) 978 WP_338592889.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21832.00 Da        Isoelectric Point: 4.6835

>NTDB_id=942759 V6986_RS15780 WP_024427684.1 3088080..3088676(+) (clpP) [Bacillus safensis strain yw6]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=942759 V6986_RS15780 WP_024427684.1 3088080..3088676(+) (clpP) [Bacillus safensis strain yw6]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGCGGAGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATACAGAAGACCAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

93.939

100

0.939
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53