Detailed information NTG0941227

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: V6K67_RS00870
• Genome accession: NZ_CP145941
• Coordinates: 170827..171255 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain TCI633
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 165827..176255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6K67_RS00830 (V6K67_00830)	-	165965..166408 (-)	444	WP_011681680.1	hypothetical protein	-
V6K67_RS00835 (V6K67_00835)	-	166482..166907 (-)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
V6K67_RS00840 (V6K67_00840)	-	167150..167347 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
V6K67_RS00845 (V6K67_00845)	-	167596..168789 (-)	1194	WP_338500846.1	acetate kinase	-
V6K67_RS00850 (V6K67_00850)	comYH	168845..169801 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
V6K67_RS00855 (V6K67_00855)	comGG	169846..170163 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
V6K67_RS00860 (V6K67_00860)	comYF	170141..170578 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
V6K67_RS00865 (V6K67_00865)	comGE	170562..170855 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
V6K67_RS00870 (V6K67_00870)	comYD	170827..171255 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
V6K67_RS00875 (V6K67_00875)	comYC	171215..171541 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
V6K67_RS00880 (V6K67_00880)	comYB	171538..172638 (-)	1101	WP_148148900.1	competence type IV pilus assembly protein ComGB	Machinery gene
V6K67_RS00885 (V6K67_00885)	comGA/cglA/cilD	172520..173461 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
V6K67_RS00890 (V6K67_00890)	-	173542..173904 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=941227 V6K67_RS00870 WP_011226626.1 170827..171255(-) (comYD) [Streptococcus thermophilus strain TCI633]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=941227 V6K67_RS00870 WP_011226626.1 170827..171255(-) (comYD) [Streptococcus thermophilus strain TCI633]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38