Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   V6K67_RS00850 Genome accession   NZ_CP145941
Coordinates   168845..169801 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain TCI633     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163845..174801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6K67_RS00820 (V6K67_00820) proC 164400..165170 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  V6K67_RS00825 (V6K67_00825) - 165200..165862 (-) 663 WP_011227583.1 type II CAAX endopeptidase family protein -
  V6K67_RS00830 (V6K67_00830) - 165965..166408 (-) 444 WP_011681680.1 hypothetical protein -
  V6K67_RS00835 (V6K67_00835) - 166482..166907 (-) 426 WP_041827107.1 CPBP family intramembrane glutamic endopeptidase -
  V6K67_RS00840 (V6K67_00840) - 167150..167347 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  V6K67_RS00845 (V6K67_00845) - 167596..168789 (-) 1194 WP_338500846.1 acetate kinase -
  V6K67_RS00850 (V6K67_00850) comYH 168845..169801 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  V6K67_RS00855 (V6K67_00855) comGG 169846..170163 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  V6K67_RS00860 (V6K67_00860) comYF 170141..170578 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6K67_RS00865 (V6K67_00865) comGE 170562..170855 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  V6K67_RS00870 (V6K67_00870) comYD 170827..171255 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6K67_RS00875 (V6K67_00875) comYC 171215..171541 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  V6K67_RS00880 (V6K67_00880) comYB 171538..172638 (-) 1101 WP_148148900.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6K67_RS00885 (V6K67_00885) comGA/cglA/cilD 172520..173461 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  V6K67_RS00890 (V6K67_00890) - 173542..173904 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=941225 V6K67_RS00850 WP_011226622.1 168845..169801(-) (comYH) [Streptococcus thermophilus strain TCI633]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=941225 V6K67_RS00850 WP_011226622.1 168845..169801(-) (comYH) [Streptococcus thermophilus strain TCI633]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682