Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   V6U69_RS08820 Genome accession   NZ_CP145867
Coordinates   1917659..1918558 (-) Length   299 a.a.
NCBI ID   WP_049545716.1    Uniprot ID   A0AB37D894
Organism   Streptococcus salivarius strain KSS10     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912659..1923558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS08805 (V6U69_08800) - 1913485..1914879 (+) 1395 WP_241502385.1 DUF4153 domain-containing protein -
  V6U69_RS08810 (V6U69_08805) - 1914931..1915263 (-) 333 WP_014633880.1 DUF805 domain-containing protein -
  V6U69_RS08815 (V6U69_08810) comA 1915388..1917484 (-) 2097 WP_410533704.1 peptide cleavage/export ABC transporter Regulator
  V6U69_RS08820 (V6U69_08815) comR 1917659..1918558 (-) 900 WP_049545716.1 helix-turn-helix transcriptional regulator Regulator
  V6U69_RS08825 (V6U69_08820) - 1918737..1919387 (-) 651 WP_155198346.1 phosphatase PAP2 family protein -
  V6U69_RS08830 (V6U69_08825) - 1919390..1919947 (-) 558 WP_155198345.1 ECF transporter S component -
  V6U69_RS08835 (V6U69_08830) - 1920258..1920767 (-) 510 WP_021143543.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6U69_RS08840 (V6U69_08835) trkA 1921045..1922394 (+) 1350 WP_037598979.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35185.64 Da        Isoelectric Point: 5.3732

>NTDB_id=940805 V6U69_RS08820 WP_049545716.1 1917659..1918558(-) (comR) [Streptococcus salivarius strain KSS10]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMTDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKEAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=940805 V6U69_RS08820 WP_049545716.1 1917659..1918558(-) (comR) [Streptococcus salivarius strain KSS10]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCGCTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGACCGATTTATTGGATCATGATAATATTACTATCCCTGACGAATACTACGAG
ATGAAGAATCGTCTGATTAAGTTTCCAACGTATAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAGGT
CTATGAGAAATTCTTTGAACTTCTCCCAGAAGAAGAATTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
GTTGGGAAGAGAGTCCTAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTTATTGACTACTATTTCTTCCATCTTTATGGAAGAAAACAGTATGATAAAAAACTTTTTGAAAGAAT
CGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTCTATAATATTGTTTTGTTTAATGATTTGATGGCTATTG
CTGCTTTGAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCCAAATATGAACTTCTTCATAAAGGAAACAAGAAAGAGGC
TGCAGAAAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTACTAGAAGAAAGTATAAAGGCAGGTA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

99.666

100

0.997
  comR Streptococcus salivarius SK126

98.328

100

0.983
  comR Streptococcus thermophilus LMG 18311

95.652

100

0.957
  comR Streptococcus thermophilus LMD-9

94.983

100

0.95
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421