Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V6U69_RS08815 Genome accession   NZ_CP145867
Coordinates   1915388..1917484 (-) Length   698 a.a.
NCBI ID   WP_410533704.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1910388..1922484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS08790 (V6U69_08785) - 1911914..1912225 (-) 312 WP_002886559.1 urease subunit beta -
  V6U69_RS08795 (V6U69_08790) - 1912237..1912539 (-) 303 WP_002886558.1 urease subunit gamma -
  V6U69_RS08800 (V6U69_08795) - 1912564..1913079 (-) 516 WP_002886548.1 AmiS/UreI family transporter -
  V6U69_RS08805 (V6U69_08800) - 1913485..1914879 (+) 1395 WP_241502385.1 DUF4153 domain-containing protein -
  V6U69_RS08810 (V6U69_08805) - 1914931..1915263 (-) 333 WP_014633880.1 DUF805 domain-containing protein -
  V6U69_RS08815 (V6U69_08810) comA 1915388..1917484 (-) 2097 WP_410533704.1 peptide cleavage/export ABC transporter Regulator
  V6U69_RS08820 (V6U69_08815) comR 1917659..1918558 (-) 900 WP_049545716.1 helix-turn-helix transcriptional regulator Regulator
  V6U69_RS08825 (V6U69_08820) - 1918737..1919387 (-) 651 WP_155198346.1 phosphatase PAP2 family protein -
  V6U69_RS08830 (V6U69_08825) - 1919390..1919947 (-) 558 WP_155198345.1 ECF transporter S component -
  V6U69_RS08835 (V6U69_08830) - 1920258..1920767 (-) 510 WP_021143543.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6U69_RS08840 (V6U69_08835) trkA 1921045..1922394 (+) 1350 WP_037598979.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78496.54 Da        Isoelectric Point: 9.1873

>NTDB_id=940804 V6U69_RS08815 WP_410533704.1 1915388..1917484(-) (comA) [Streptococcus salivarius strain KSS10]
MSKYPYISQVDQRDCGVAALAMILKHYGSSYSLAYLRELAQTSREGTSALGLVEAAKQLGLETQAIRADLDLFKQENLSY
PFIVHVVKEGGLQHYYTVFGQIKGKLVIGDPDPSKKVIKMPLEEFAKEWTGVALFFVPGETYTKYKEDVPGLLSFLPILF
RRKGLIAVIVLLSFLVTLVNIIGSYYLQSIIDRLIPQEAYTLLTMISLGLCISYLAQQVFTFFKDYLLHRLGNYLSIAVI
LPYIKHVLSLPISFFSSRRTGEITSRFGDANTIIDALASTILSIFLDVTIVMTLAVALILQNQSLFVMTLTVVPLYVLII
LAFYKLFEKENYQLMEANSQVNTAVIDDLRGIETLKSLRVEERRYQEIEVKFHDYLKKSLSKAKWQLTQDGLKTGVQLVS
NVFILWYGAQLVMEGQLSAGQLITYNMLLNYFTTPLINIINLQSKIQQAKVANNRLQEVYVVDKEEKGKLKELSFKQLAL
KGVSHRFSYQQETLSKIDLTIHKGEKIALMGKSGSGKTTLAKMLSGYYTKSSGHVTLDKDAIGHAELRQMVTYVPQQTYV
FTGTILENLMLGFEGEVDEKELLKVCQQADILKDIQKMPLGFQTQVSEDGGLSGGQKQRLAIARALLSKQPILIFDEATS
GLDSDTESRVMANLAKIKRTMIFIAHRNSVRQHVSRVVTMVSGQIESDSPNFNPFQFI

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=940804 V6U69_RS08815 WP_410533704.1 1915388..1917484(-) (comA) [Streptococcus salivarius strain KSS10]
ATGTCAAAATATCCATATATTTCACAGGTTGATCAGCGTGATTGTGGTGTCGCTGCCTTGGCTATGATTCTTAAACACTA
TGGTTCATCTTATAGTTTAGCTTATTTGCGAGAGTTGGCTCAGACTTCTCGTGAAGGTACTTCTGCGCTTGGTTTGGTGG
AAGCGGCCAAGCAGTTGGGTCTTGAAACTCAGGCTATTCGTGCGGATTTAGACTTGTTTAAACAAGAAAACCTATCTTAT
CCTTTTATTGTACATGTGGTTAAAGAAGGTGGGCTGCAACATTATTATACGGTGTTTGGTCAAATCAAGGGGAAGCTTGT
TATTGGTGATCCAGATCCTAGCAAGAAGGTCATTAAAATGCCCTTAGAGGAGTTTGCCAAAGAGTGGACGGGAGTTGCTC
TCTTTTTTGTTCCAGGAGAAACTTACACTAAATACAAAGAAGATGTGCCTGGGCTTCTTTCATTTTTACCAATTTTGTTT
CGTCGTAAGGGTTTGATTGCAGTTATTGTCTTGTTAAGTTTTCTAGTGACCCTTGTTAATATTATTGGTTCTTATTATTT
GCAATCTATTATTGACCGCTTGATTCCTCAGGAGGCCTACACTCTTCTAACCATGATTTCGCTAGGCCTATGTATCTCTT
ATCTAGCTCAACAAGTATTTACTTTTTTCAAAGATTATCTTCTACATCGATTGGGGAATTACTTGTCCATTGCTGTCATT
CTTCCTTATATTAAGCATGTCCTTTCCTTACCTATTAGTTTCTTTAGTTCACGTCGTACTGGTGAAATCACGTCACGTTT
TGGAGATGCCAACACTATTATCGATGCTCTAGCTTCAACGATTTTATCGATTTTCCTAGATGTGACCATTGTGATGACTT
TAGCTGTGGCCCTTATTTTACAAAATCAGTCACTTTTTGTGATGACTCTCACGGTAGTGCCTCTTTATGTGTTAATCATT
TTGGCATTCTATAAGCTTTTTGAAAAGGAAAATTATCAATTGATGGAGGCAAATAGTCAGGTCAATACCGCTGTTATTGA
TGATTTGCGAGGTATTGAAACCTTAAAATCCTTGAGAGTTGAAGAGAGACGCTATCAGGAAATTGAGGTGAAATTCCATG
ACTATTTGAAGAAGTCTTTGTCTAAGGCCAAGTGGCAATTAACACAGGATGGTTTAAAGACAGGGGTTCAGTTAGTTTCC
AATGTCTTTATCCTCTGGTATGGGGCACAATTGGTCATGGAAGGACAGCTATCTGCAGGTCAGTTGATTACCTATAATAT
GTTGCTGAATTATTTTACAACTCCTTTAATTAATATTATCAATCTCCAATCTAAAATTCAGCAAGCCAAAGTAGCCAATA
ATCGTCTTCAAGAAGTTTATGTTGTGGATAAGGAAGAAAAAGGAAAACTTAAAGAGTTATCCTTTAAACAACTTGCTCTT
AAGGGTGTCAGTCACCGTTTTAGTTATCAGCAAGAGACGCTTAGTAAGATTGATTTAACGATTCATAAGGGTGAGAAAAT
TGCCCTCATGGGTAAAAGTGGATCTGGGAAAACGACCTTGGCTAAAATGTTGTCAGGTTATTATACGAAATCTAGTGGTC
ATGTAACCCTAGATAAAGATGCTATTGGCCATGCGGAGCTGCGTCAAATGGTGACTTACGTTCCCCAGCAGACCTATGTG
TTTACTGGAACCATTTTAGAAAATCTGATGTTAGGATTTGAAGGAGAAGTTGACGAGAAAGAGCTTCTTAAGGTTTGCCA
ACAAGCTGATATCTTAAAGGATATTCAAAAAATGCCACTAGGTTTTCAGACCCAAGTATCTGAGGATGGTGGTCTATCTG
GTGGTCAAAAACAACGCTTAGCGATAGCGAGGGCCCTCTTATCCAAGCAGCCTATCTTGATTTTTGACGAAGCTACCAGT
GGTCTCGATAGTGATACTGAAAGCAGGGTTATGGCTAATCTTGCTAAGATTAAACGAACAATGATTTTTATTGCTCACCG
CAATAGTGTCCGTCAACATGTCAGTCGTGTGGTGACTATGGTGAGTGGCCAGATTGAGTCGGACAGTCCTAATTTCAATC
CATTCCAGTTTATTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(167-436)

Peptidase C39 family (Peptidase_C39)

(3-139)

ABC transporter (ABC_tran)

(494-640)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.546

98.997

0.53
  comA Streptococcus gordonii str. Challis substr. CH1

53.017

99.713

0.529
  comA Streptococcus mitis NCTC 12261

53.111

98.997

0.526
  comA Streptococcus pneumoniae Rx1

52.967

98.997

0.524
  comA Streptococcus pneumoniae D39

52.967

98.997

0.524
  comA Streptococcus pneumoniae R6

52.967

98.997

0.524
  comA Streptococcus pneumoniae TIGR4

52.822

98.997

0.523
  comA/nlmT Streptococcus mutans UA159

50.435

98.854

0.499