Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V6U68_RS01685 Genome accession   NZ_CP145866
Coordinates   321798..322388 (+) Length   196 a.a.
NCBI ID   WP_080611198.1    Uniprot ID   A0A1V0GGB3
Organism   Streptococcus salivarius strain KSS9     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 316798..327388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS01675 (V6U68_01670) - 317989..320904 (+) 2916 WP_410531787.1 glycoside hydrolase family 68 protein -
  V6U68_RS01680 (V6U68_01675) upp 320994..321623 (+) 630 WP_002883819.1 uracil phosphoribosyltransferase -
  V6U68_RS01685 (V6U68_01680) clpP 321798..322388 (+) 591 WP_080611198.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V6U68_RS01690 (V6U68_01685) - 322474..322923 (+) 450 WP_410531789.1 YlbF family regulator -
  V6U68_RS01695 (V6U68_01690) - 322916..323197 (+) 282 WP_002890011.1 YlbG family protein -
  V6U68_RS01700 (V6U68_01695) - 323352..324527 (+) 1176 WP_410531790.1 ABC transporter substrate-binding protein -
  V6U68_RS01705 (V6U68_01700) - 324571..325455 (+) 885 WP_195969082.1 branched-chain amino acid ABC transporter permease -
  V6U68_RS01710 (V6U68_01705) - 325459..326409 (+) 951 WP_002883720.1 branched-chain amino acid ABC transporter permease -
  V6U68_RS01715 (V6U68_01710) - 326412..327176 (+) 765 WP_021143582.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21542.58 Da        Isoelectric Point: 4.5831

>NTDB_id=940698 V6U68_RS01685 WP_080611198.1 321798..322388(+) (clpP) [Streptococcus salivarius strain KSS9]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGH
PIEKVHVDAERDNWMSAQETLEYGFIDEIMANNQLK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=940698 V6U68_RS01685 WP_080611198.1 321798..322388(+) (clpP) [Streptococcus salivarius strain KSS9]
ATGATTCCTGTAGTAATTGAACAAACATCACGAGGTGAGCGTTCTTATGATATTTACTCACGTTTGCTCAAGGATCGTAT
CATCATGTTAACAGGTCCTGTTGAAGATAATATGGCAAACTCAATTATCGCCCAACTCTTGTTCTTGGATGCTCAAGACA
ATACAAAAGATATCTATCTTTATGTTAATACACCAGGTGGATCCGTTTCGGCAGGTCTTGCCATTGTTGATACAATGAAC
TTCATCAAGTCTGATGTTCAGACTATCGTTATGGGGATGGCAGCATCTATGGGAACAATTATCGCTTCAAGCGGTACCAA
AGGTAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTGGTACTGGTGGTGGTACGCAACAAA
CAGACATGGCTATTGCAGCTGAACATTTGCTCAAAACGCGTAATAACTTGGAGCAAATCTTGGCGGATAATTCTGGACAT
CCAATTGAAAAAGTTCATGTAGACGCTGAACGTGACAATTGGATGAGTGCCCAAGAAACGCTTGAATATGGCTTTATCGA
TGAAATCATGGCTAATAACCAATTAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GGB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

98.469

100

0.985
  clpP Streptococcus thermophilus LMD-9

98.469

100

0.985
  clpP Streptococcus pneumoniae D39

93.333

99.49

0.929
  clpP Streptococcus pneumoniae R6

93.333

99.49

0.929
  clpP Streptococcus pneumoniae TIGR4

93.333

99.49

0.929
  clpP Streptococcus pneumoniae Rx1

93.333

99.49

0.929
  clpP Streptococcus pyogenes MGAS315

90.306

100

0.903
  clpP Streptococcus pyogenes JRS4

90.306

100

0.903
  clpP Streptococcus mutans UA159

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.755

100

0.878
  clpP Lactococcus lactis subsp. cremoris KW2

87.245

100

0.872
  clpP Bacillus subtilis subsp. subtilis str. 168

57.653

100

0.577
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.513

98.469

0.566