Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   V6U68_RS01355 Genome accession   NZ_CP145866
Coordinates   251422..252321 (+) Length   299 a.a.
NCBI ID   WP_049545716.1    Uniprot ID   A0AB37D894
Organism   Streptococcus salivarius strain KSS9     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 246422..257321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS01335 (V6U68_01330) trkA 247586..248935 (-) 1350 WP_037598979.1 Trk system potassium transporter TrkA -
  V6U68_RS01340 (V6U68_01335) - 249213..249722 (+) 510 WP_021143543.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6U68_RS01345 (V6U68_01340) - 250033..250590 (+) 558 WP_002886542.1 ECF transporter S component -
  V6U68_RS01350 (V6U68_01345) - 250593..251243 (+) 651 WP_002889918.1 phosphatase PAP2 family protein -
  V6U68_RS01355 (V6U68_01350) comR 251422..252321 (+) 900 WP_049545716.1 helix-turn-helix transcriptional regulator Regulator
  V6U68_RS01360 (V6U68_01355) comA 252496..254592 (+) 2097 WP_247924952.1 peptide cleavage/export ABC transporter Regulator
  V6U68_RS01365 (V6U68_01360) - 254703..255035 (+) 333 WP_002886546.1 DUF805 domain-containing protein -
  V6U68_RS01370 (V6U68_01365) - 255087..256481 (-) 1395 WP_410531762.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35185.64 Da        Isoelectric Point: 5.3732

>NTDB_id=940694 V6U68_RS01355 WP_049545716.1 251422..252321(+) (comR) [Streptococcus salivarius strain KSS9]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMTDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKEAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=940694 V6U68_RS01355 WP_049545716.1 251422..252321(+) (comR) [Streptococcus salivarius strain KSS9]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCGCTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGACCGATTTATTGGATCATGATAATATTACTATCCCTGACGAATACTACGAG
ATGAAGAATCGTCTGATTAAGTTTCCAACGTATAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAGGT
CTATGAGAAATTCTTTGAACTTCTCCCAGAAGAAGAATTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
GTTGGGAAGAGAGTCCTAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTTATTGACTACTATTTCTTCCATCTTTATGGAAGAAAACAGTATGATAAAAAACTTTTTGAAAGAAT
CGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTCTATAATATTGTTTTGTTTAATGATTTGATGGCTATTG
CTGCTTTGAAGATTTTTCACAATTCCTTTTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCCAAATATGAACTTCTTCATAAAGGAAACAAGAAAGAGGC
TGCAGAAAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTACTAGAAGAAAGTATAAAGGCAGGTA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

99.666

100

0.997
  comR Streptococcus salivarius SK126

98.328

100

0.983
  comR Streptococcus thermophilus LMG 18311

95.652

100

0.957
  comR Streptococcus thermophilus LMD-9

94.983

100

0.95
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421