Detailed information NTG0940675

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: V6U67_RS09190
• Genome accession: NZ_CP145865
• Coordinates: 1983033..1983461 (-)
• Length: 142 a.a.
• NCBI ID: WP_014632541.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS8
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1978033..1988461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U67_RS09150 (V6U67_09155)	-	1978161..1978607 (-)	447	WP_022496102.1	hypothetical protein	-
V6U67_RS09155 (V6U67_09160)	-	1978685..1979341 (-)	657	WP_002885876.1	CPBP family intramembrane glutamic endopeptidase	-
V6U67_RS09160 (V6U67_09165)	-	1979353..1979550 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
V6U67_RS09165 (V6U67_09170)	-	1979801..1980994 (-)	1194	WP_002885831.1	acetate kinase	-
V6U67_RS09170 (V6U67_09175)	comYH	1981051..1982007 (-)	957	WP_022496101.1	class I SAM-dependent methyltransferase	Machinery gene
V6U67_RS09175 (V6U67_09180)	comGG	1982052..1982369 (-)	318	WP_021144683.1	competence type IV pilus minor pilin ComGG	-
V6U67_RS09180 (V6U67_09185)	comYF	1982347..1982784 (-)	438	WP_022496100.1	competence type IV pilus minor pilin ComGF	Machinery gene
V6U67_RS09185 (V6U67_09190)	comGE	1982771..1983001 (-)	231	WP_002887015.1	competence type IV pilus minor pilin ComGE	-
V6U67_RS09190 (V6U67_09195)	comYD	1983033..1983461 (-)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
V6U67_RS09195 (V6U67_09200)	comYC	1983421..1983735 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
V6U67_RS09200 (V6U67_09205)	comYB	1983744..1984844 (-)	1101	WP_156024868.1	competence type IV pilus assembly protein ComGB	Machinery gene
V6U67_RS09205 (V6U67_09210)	comYA	1984726..1985667 (-)	942	WP_022496097.1	competence type IV pilus ATPase ComGA	Machinery gene
V6U67_RS09210 (V6U67_09215)	-	1985747..1986109 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15729.16 Da
• Isoelectric Point: 10.3019

>NTDB_id=940675 V6U67_RS09190 WP_014632541.1 1983033..1983461(-) (comYD) [Streptococcus salivarius strain KSS8]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=940675 V6U67_RS09190 WP_014632541.1 1983033..1983461(-) (comYD) [Streptococcus salivarius strain KSS8]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTATCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAGACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTTGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCAAGTCTGGTGATTCCTAAAAATATACATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.857	98.592	0.423
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	41.667	92.958	0.387