Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   V6U67_RS09200 Genome accession   NZ_CP145865
Coordinates   1983744..1984844 (-) Length   366 a.a.
NCBI ID   WP_156024868.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978744..1989844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS09160 (V6U67_09165) - 1979353..1979550 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  V6U67_RS09165 (V6U67_09170) - 1979801..1980994 (-) 1194 WP_002885831.1 acetate kinase -
  V6U67_RS09170 (V6U67_09175) comYH 1981051..1982007 (-) 957 WP_022496101.1 class I SAM-dependent methyltransferase Machinery gene
  V6U67_RS09175 (V6U67_09180) comGG 1982052..1982369 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  V6U67_RS09180 (V6U67_09185) comYF 1982347..1982784 (-) 438 WP_022496100.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6U67_RS09185 (V6U67_09190) comGE 1982771..1983001 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  V6U67_RS09190 (V6U67_09195) comYD 1983033..1983461 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6U67_RS09195 (V6U67_09200) comYC 1983421..1983735 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  V6U67_RS09200 (V6U67_09205) comYB 1983744..1984844 (-) 1101 WP_156024868.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6U67_RS09205 (V6U67_09210) comYA 1984726..1985667 (-) 942 WP_022496097.1 competence type IV pilus ATPase ComGA Machinery gene
  V6U67_RS09210 (V6U67_09215) - 1985747..1986109 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41666.79 Da        Isoelectric Point: 10.1478

>NTDB_id=940677 V6U67_RS09200 WP_156024868.1 1983744..1984844(-) (comYB) [Streptococcus salivarius strain KSS8]
MPVKISKAIRQPTGTSSWKAWLNKDISLKGISKGKKLKINQQLKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFASVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKENWAVQLVQIFPQLFFVTLCGLLVLSLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGADLEEALMLGQSFPDRIATHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=940677 V6U67_RS09200 WP_156024868.1 1983744..1984844(-) (comYB) [Streptococcus salivarius strain KSS8]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAACTGGAACCAGCAGTTGGAAGGCTTGGTTAAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAACTCAAGGTTATCCAGCTTTTCAAACAACTTTTAA
AGGCAGGGTTTACCTTGACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCCTTGTCTCTTATG
AAAGCGAGCTTAATGCGAGGCGACAGGTTGGACCAGATGTTTGCGTCAGTAGGTTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACCAAGATTGAAACCTACATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTATCCTATTCTACTTCTGGGTTTCCTGATTCTGATTATGTTGGGGCTCAAAAAT
TATCTTCTGCCTCAACTGTTAGAGGGGGATGGTAAGGAGAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTCTT
TTTTGTGACTTTGTGCGGACTTCTTGTATTAAGCTTAATTCTCTATCTATGGGTGAAACGCCAGTCAGCCCTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTTATAGGCCAAACTGTCAGGCTATATACGACTGCCTATTATGCTAGAGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTGCTAGACTTAGTTGCTCTAATGAAAGAGCAAAAGTCCAAGCTTTTTCGTGAGCT
GGGGGCTGATTTAGAGGAAGCCTTGATGCTAGGACAGAGTTTTCCTGACCGAATTGCTACTCACCCATTTTTCACTAAGG
AGCTATCCTTAATTATTGCTTATGGAGAGGCCAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCTATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.394

93.716

0.519
  comYB Streptococcus mutans UA159

55.394

93.716

0.519
  comYB Streptococcus gordonii str. Challis substr. CH1

51.312

93.716

0.481
  comGB/cglB Streptococcus mitis NCTC 12261

50.737

92.623

0.47
  comGB/cglB Streptococcus mitis SK321

50

92.35

0.462
  comGB/cglB Streptococcus pneumoniae Rx1

49.704

92.35

0.459
  comGB/cglB Streptococcus pneumoniae D39

49.704

92.35

0.459
  comGB/cglB Streptococcus pneumoniae R6

49.704

92.35

0.459
  comGB/cglB Streptococcus pneumoniae TIGR4

49.704

92.35

0.459
  comGB Lactococcus lactis subsp. cremoris KW2

44.985

89.891

0.404