Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V6U67_RS07625 Genome accession   NZ_CP145865
Coordinates   1684110..1684805 (-) Length   231 a.a.
NCBI ID   WP_272125634.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1679110..1689805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS07610 (V6U67_07620) - 1679921..1680466 (-) 546 WP_049545582.1 GNAT family N-acetyltransferase -
  V6U67_RS07615 (V6U67_07625) - 1680532..1681794 (-) 1263 WP_002884638.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6U67_RS07620 (V6U67_07630) comEC/celB 1681880..1684120 (-) 2241 WP_195914563.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6U67_RS07625 (V6U67_07635) comEA 1684110..1684805 (-) 696 WP_272125634.1 helix-hairpin-helix domain-containing protein Machinery gene
  V6U67_RS07630 (V6U67_07640) - 1684914..1685669 (-) 756 WP_022496132.1 lysophospholipid acyltransferase family protein -
  V6U67_RS07635 (V6U67_07645) - 1685799..1686734 (+) 936 WP_022496131.1 polysaccharide deacetylase family protein -
  V6U67_RS07640 (V6U67_07650) - 1686784..1687548 (+) 765 WP_022496130.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6U67_RS07645 (V6U67_07655) - 1687552..1687821 (+) 270 WP_022496129.1 GIY-YIG nuclease family protein -
  V6U67_RS07650 (V6U67_07660) - 1687877..1689463 (-) 1587 WP_410531172.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24362.26 Da        Isoelectric Point: 4.7321

>NTDB_id=940662 V6U67_RS07625 WP_272125634.1 1684110..1684805(-) (comEA) [Streptococcus salivarius strain KSS8]
MKEKIIAYVKDNRLFVSVIALLMVIFCFFLWMTCGAGNSMEAETSYTDVTALSTSSSKQSSQSLSEASSQSKTEGSEKEK
SKVTVDVKGAVANPGVYTLKASARVTDAIKAAGGMTEDADAKSVNLAASLSDEEVVYVATKDENLSVLGQSGTGQVSDKG
GQTSAKDGKINLNTATSEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=940662 V6U67_RS07625 WP_272125634.1 1684110..1684805(-) (comEA) [Streptococcus salivarius strain KSS8]
GTGAAGGAAAAGATTATAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTTTACTGATGGTGATTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CCTCCTCCTCCAAACAAAGTTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACTGAAGGAAGTGAAAAGGAGAAG
TCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGCTAATCCGGGTGTTTATACTTTAAAAGCAAGCGCTAGGGTGACTGA
TGCCATCAAAGCTGCTGGGGGAATGACTGAGGATGCGGATGCTAAGAGTGTTAATTTAGCTGCAAGCCTGTCGGACGAAG
AGGTTGTCTATGTGGCAACTAAGGATGAAAACCTTTCTGTTCTTGGTCAATCAGGAACTGGTCAGGTTTCTGACAAAGGA
GGGCAAACTAGTGCTAAGGATGGCAAAATTAACTTAAACACAGCGACTTCAGAGGAGTTGCAAACTATTTCTGGGATTGG
AGCTAAGCGTGCTGAGGATATCATTGCCTATCGTGAAAGTCATGGAGGTTTTCAATCCGTAGATGACTTGAAAAATGTCT
CAGGAATTGGTGATAAAACTTTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(168-228)

SLBB domain (SLBB)

(85-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

92.208

100

0.922
  comEA/celA/cilE Streptococcus mitis SK321

42.358

99.134

0.42
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

41.228

98.701

0.407
  comEA/celA/cilE Streptococcus pneumoniae Rx1

40.789

98.701

0.403
  comEA/celA/cilE Streptococcus pneumoniae D39

40.789

98.701

0.403
  comEA/celA/cilE Streptococcus pneumoniae R6

40.789

98.701

0.403
  comEA/celA/cilE Streptococcus mitis NCTC 12261

39.912

98.701

0.394