Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V6U67_RS01740 Genome accession   NZ_CP145865
Coordinates   336115..336705 (+) Length   196 a.a.
NCBI ID   WP_070655552.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 331115..341705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS01730 (V6U67_01735) - 332307..335222 (+) 2916 WP_037599043.1 glycoside hydrolase family 68 protein -
  V6U67_RS01735 (V6U67_01740) upp 335312..335941 (+) 630 WP_002883819.1 uracil phosphoribosyltransferase -
  V6U67_RS01740 (V6U67_01745) clpP 336115..336705 (+) 591 WP_070655552.1 ATP-dependent Clp protease proteolytic subunit ClpP Regulator
  V6U67_RS01745 (V6U67_01750) - 336791..337240 (+) 450 WP_080611199.1 YlbF family regulator -
  V6U67_RS01750 (V6U67_01755) - 337233..337514 (+) 282 WP_014633923.1 DUF2129 domain-containing protein -
  V6U67_RS01755 (V6U67_01760) - 337669..338844 (+) 1176 WP_014633924.1 ABC transporter substrate-binding protein -
  V6U67_RS01760 (V6U67_01765) - 338888..339772 (+) 885 WP_002890014.1 branched-chain amino acid ABC transporter permease -
  V6U67_RS01765 (V6U67_01770) - 339776..340726 (+) 951 WP_037600371.1 branched-chain amino acid ABC transporter permease -
  V6U67_RS01770 (V6U67_01775) - 340729..341493 (+) 765 WP_195519979.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21505.52 Da        Isoelectric Point: 4.4829

>NTDB_id=940631 V6U67_RS01740 WP_070655552.1 336115..336705(+) (clpP) [Streptococcus salivarius strain KSS8]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQ
PIEKVHADAERDNWMSAQETLEYGFIDEIMANNQLK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=940631 V6U67_RS01740 WP_070655552.1 336115..336705(+) (clpP) [Streptococcus salivarius strain KSS8]
ATGATTCCTGTAGTAATTGAACAAACATCACGCGGTGAGCGTTCTTATGATATTTACTCGCGTTTGCTCAAGGATCGTAT
CATCATGTTAACAGGTCCTGTTGAAGATAATATGGCAAACTCAATTATCGCCCAACTTTTGTTCTTGGATGCTCAAGACA
ATACAAAAGATATCTATCTTTATGTTAATACACCAGGTGGATCCGTTTCGGCAGGTCTTGCCATTGTTGATACAATGAAC
TTCATCAAGTCTGATGTTCAGACTATCGTTATGGGGATGGCAGCATCTATGGGAACAATTATCGCTTCAAGCGGTACCAA
AGGTAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTGGTACTGGTGGCGGTACGCAACAAA
CAGACATGGCTATCGCAGCTGAACACTTGCTCAAGACACGTAATAACTTGGAGCAAATCTTGGCAGATAATTCTGGACAA
CCAATTGAAAAAGTTCATGCAGACGCTGAACGTGACAATTGGATGAGTGCTCAAGAAACGCTTGAATATGGCTTTATCGA
TGAAATCATGGCTAATAACCAATTAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

98.469

100

0.985
  clpP Streptococcus thermophilus LMD-9

98.469

100

0.985
  clpP Streptococcus pneumoniae Rx1

94.359

99.49

0.939
  clpP Streptococcus pneumoniae D39

94.359

99.49

0.939
  clpP Streptococcus pneumoniae R6

94.359

99.49

0.939
  clpP Streptococcus pneumoniae TIGR4

94.359

99.49

0.939
  clpP Streptococcus pyogenes JRS4

90.306

100

0.903
  clpP Streptococcus pyogenes MGAS315

90.306

100

0.903
  clpP Streptococcus mutans UA159

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.755

100

0.878
  clpP Lactococcus lactis subsp. cremoris KW2

87.245

100

0.872
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571