Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   V6U67_RS01465 Genome accession   NZ_CP145865
Coordinates   274256..275155 (+) Length   299 a.a.
NCBI ID   WP_410531229.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 269256..280155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS01445 (V6U67_01450) trkA 270419..271768 (-) 1350 WP_014633874.1 Trk system potassium transporter TrkA -
  V6U67_RS01450 (V6U67_01455) - 272046..272555 (+) 510 WP_118172046.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6U67_RS01455 (V6U67_01460) - 272866..273423 (+) 558 WP_002883726.1 ECF transporter S component -
  V6U67_RS01460 (V6U67_01465) - 273426..274076 (+) 651 WP_002883719.1 phosphatase PAP2 family protein -
  V6U67_RS01465 (V6U67_01470) comR 274256..275155 (+) 900 WP_410531229.1 XRE family transcriptional regulator Regulator
  V6U67_RS01470 (V6U67_01475) comA 275330..277426 (+) 2097 WP_179968641.1 peptide cleavage/export ABC transporter Regulator
  V6U67_RS01475 (V6U67_01480) - 277536..277868 (+) 333 WP_014633880.1 DUF805 domain-containing protein -
  V6U67_RS01480 (V6U67_01485) - 277920..279314 (-) 1395 WP_272126731.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35116.63 Da        Isoelectric Point: 5.5724

>NTDB_id=940627 V6U67_RS01465 WP_410531229.1 274256..275155(+) (comR) [Streptococcus salivarius strain KSS8]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKCLGKNMSDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKSKLALIEEVYEKFFELLPEEELLTLDILENILSFTNWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQFDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKKAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=940627 V6U67_RS01465 WP_410531229.1 274256..275155(+) (comR) [Streptococcus salivarius strain KSS8]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGTCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTGCGTCAGTTAATTCGTATTGAAAAAGGGGAGTCACTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAATGTCTAGGAAAAAATATGTCTGATCTATTGGATCATGACAATATTACCATTCCTGACGAATATTATGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAATCCAGAAAGAATAAAGTCTAAACTTGCCTTAATTGAGGAAGT
CTATGAGAAATTCTTTGAACTTCTTCCAGAAGAAGAGTTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
ATTGGGAGGAGAGCCCAAAGGTTGAAGAAATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTCTATGGAAGAAAACAGTTTGACAAAAAACTTTTTGAAAGGAT
TGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTCTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTTTCAGACTTCTTAACAGTTGTGGATAAAGCATTAGCCGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCTAAATATGAACTTCTGCATAAGGGAAATAAGAAAAAGGC
TGCAGAGAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAAGAAAGTATAAAAGCAGGGA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

97.324

100

0.973
  comR Streptococcus salivarius SK126

96.656

100

0.967
  comR Streptococcus thermophilus LMG 18311

93.98

100

0.94
  comR Streptococcus thermophilus LMD-9

93.311

100

0.933
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421