Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V6U66_RS01710 Genome accession   NZ_CP145864
Coordinates   325422..326012 (+) Length   196 a.a.
NCBI ID   WP_045768756.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 320422..331012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS01700 (V6U66_01705) - 321620..324529 (+) 2910 WP_049529423.1 glycoside hydrolase family 68 protein -
  V6U66_RS01705 (V6U66_01710) upp 324619..325248 (+) 630 WP_002883819.1 uracil phosphoribosyltransferase -
  V6U66_RS01710 (V6U66_01715) clpP 325422..326012 (+) 591 WP_045768756.1 ATP-dependent Clp protease proteolytic subunit ClpP Regulator
  V6U66_RS01715 (V6U66_01720) - 326098..326547 (+) 450 WP_049529424.1 YlbF family regulator -
  V6U66_RS01720 (V6U66_01725) - 326540..326821 (+) 282 WP_002890011.1 YlbG family protein -
  V6U66_RS01725 (V6U66_01730) - 326976..328151 (+) 1176 WP_048790259.1 ABC transporter substrate-binding protein -
  V6U66_RS01730 (V6U66_01735) - 328195..329079 (+) 885 WP_002883743.1 branched-chain amino acid ABC transporter permease -
  V6U66_RS01735 (V6U66_01740) - 329083..330033 (+) 951 WP_002883720.1 branched-chain amino acid ABC transporter permease -
  V6U66_RS01740 (V6U66_01745) - 330036..330800 (+) 765 WP_045771733.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21491.49 Da        Isoelectric Point: 4.4829

>NTDB_id=940559 V6U66_RS01710 WP_045768756.1 325422..326012(+) (clpP) [Streptococcus salivarius strain KSS7]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQ
PIEKVHADAERDNWMSAQETLEYGFIDEIMANNQLK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=940559 V6U66_RS01710 WP_045768756.1 325422..326012(+) (clpP) [Streptococcus salivarius strain KSS7]
ATGATTCCTGTAGTAATTGAACAAACATCACGCGGTGAGCGTTCTTATGATATTTACTCACGTTTGCTCAAGGATCGTAT
CATCATGTTAACAGGTCCTGTTGAAGATAATATGGCAAACTCAATTATTGCCCAACTCTTGTTTTTGGATGCTCAAGACA
ATACAAAAGATATCTATCTTTATGTTAATACACCAGGTGGATCCGTTTCGGCTGGTCTTGCCATTGTTGATACAATGAAC
TTCATCAAGTCTGATGTTCAGACTATCGTTATGGGGATGGCAGCATCTATGGGAACAGTTATCGCTTCCAGCGGTACCAA
AGGTAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGCGGTACTGGTGGCGGTACGCAACAAA
CAGACATGGCTATCGCAGCTGAACACTTGCTCAAGACACGTAATAACTTGGAGCAAATCTTGGCAGATAATTCTGGACAA
CCAATTGAAAAAGTTCATGCAGACGCTGAACGTGACAATTGGATGAGTGCTCAAGAAACGCTTGAATATGGTTTCATCGA
TGAAATCATGGCTAATAACCAATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

97.959

100

0.98
  clpP Streptococcus thermophilus LMD-9

97.959

100

0.98
  clpP Streptococcus pneumoniae Rx1

94.872

99.49

0.944
  clpP Streptococcus pneumoniae D39

94.872

99.49

0.944
  clpP Streptococcus pneumoniae R6

94.872

99.49

0.944
  clpP Streptococcus pneumoniae TIGR4

94.872

99.49

0.944
  clpP Streptococcus pyogenes JRS4

90.816

100

0.908
  clpP Streptococcus pyogenes MGAS315

90.816

100

0.908
  clpP Streptococcus mutans UA159

87.755

100

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.245

100

0.872
  clpP Lactococcus lactis subsp. cremoris KW2

86.735

100

0.867
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571