Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   V6U65_RS09310 Genome accession   NZ_CP145863
Coordinates   2009103..2010203 (-) Length   366 a.a.
NCBI ID   WP_410533115.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2004103..2015203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS09270 (V6U65_09265) - 2004712..2004909 (-) 198 WP_014635114.1 helix-turn-helix transcriptional regulator -
  V6U65_RS09275 (V6U65_09270) - 2005160..2006353 (-) 1194 WP_014635115.1 acetate kinase -
  V6U65_RS09280 (V6U65_09275) comYH 2006410..2007366 (-) 957 WP_002885753.1 class I SAM-dependent methyltransferase Machinery gene
  V6U65_RS09285 (V6U65_09280) comGG 2007411..2007728 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  V6U65_RS09290 (V6U65_09285) comYF 2007706..2008143 (-) 438 WP_021144684.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6U65_RS09295 (V6U65_09290) comGE 2008130..2008360 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  V6U65_RS09300 (V6U65_09295) comYD 2008392..2008820 (-) 429 WP_254593949.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6U65_RS09305 (V6U65_09300) comYC 2008780..2009094 (-) 315 WP_170314557.1 competence type IV pilus major pilin ComGC Machinery gene
  V6U65_RS09310 (V6U65_09305) comYB 2009103..2010203 (-) 1101 WP_410533115.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6U65_RS09315 (V6U65_09310) comYA 2010085..2011026 (-) 942 WP_410532391.1 competence type IV pilus ATPase ComGA Machinery gene
  V6U65_RS09320 (V6U65_09315) - 2011106..2011468 (-) 363 WP_002885749.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41775.88 Da        Isoelectric Point: 10.1179

>NTDB_id=940540 V6U65_RS09310 WP_410533115.1 2009103..2010203(-) (comYB) [Streptococcus salivarius strain KSS6]
MPVKISKAIRQSAGTSSWKAWLNKDISLKGIYKGKKLKINQQLKVIQLFKQLLKAGFTLTEIVDFLERSHLLKESSLSLM
KTSLMRGDRLDQMFATVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGNGKENWAVQLVQIFPQLFFVTLCGLLVLSLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGADLEEALMLGQSFPDRIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=940540 V6U65_RS09310 WP_410533115.1 2009103..2010203(-) (comYB) [Streptococcus salivarius strain KSS6]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAATCAGCTGGAACCAGCAGTTGGAAGGCTTGGTTAAACAAGGATATCTC
ACTGAAGGGGATATACAAGGGGAAAAAATTAAAGATTAATCAGCAACTCAAGGTTATCCAGCTTTTCAAACAACTTTTAA
AGGCAGGGTTTACCTTGACTGAAATCGTAGACTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCATTGTCTCTTATG
AAAACGAGTTTAATGCGAGGCGATAGGTTGGACCAGATGTTTGCAACAGTGGGCTTTTCGGACAATATTGTTACTCAGAT
TGCTCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACCAAGATTGAAACCTACATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTACCCTATTCTACTTCTGGGTTTCCTGATTCTGATTATGTTGGGGCTCAAAAAT
TATCTTCTGCCTCAATTGTTAGAGGGGAATGGTAAGGAGAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTCTT
TTTTGTGACTTTGTGCGGACTTCTTGTATTAAGCTTAATTCTCTATCTATGGGTCAAACGCCAATCAGCCCTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTTATAGGCCAAACTGTCAGGCTATATACGACTGCCTATTATGCTAGGGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTGCTAGACTTAGTTGCTCTAATGAAAGAGCAAAAGTCCAAGCTTTTTCGTGAGCT
GGGGGCTGATTTAGAAGAAGCCTTGATGCTAGGACAGAGTTTTCCTGACCGTATTGCTAGTCACCCTTTCTTCACTAAGG
AACTATCCTTAATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.394

93.716

0.519
  comYB Streptococcus mutans UA159

55.394

93.716

0.519
  comYB Streptococcus gordonii str. Challis substr. CH1

51.603

93.716

0.484
  comGB/cglB Streptococcus mitis NCTC 12261

49.853

92.623

0.462
  comGB/cglB Streptococcus mitis SK321

49.704

92.35

0.459
  comGB/cglB Streptococcus pneumoniae Rx1

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae D39

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae R6

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae TIGR4

49.112

92.35

0.454
  comGB Lactococcus lactis subsp. cremoris KW2

44.985

89.891

0.404