Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V6U64_RS08425 Genome accession   NZ_CP145862
Coordinates   1834991..1835581 (-) Length   196 a.a.
NCBI ID   WP_002883818.1    Uniprot ID   A0AB33ZFD4
Organism   Streptococcus salivarius strain KSS4     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1829991..1840581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS08395 (V6U64_08395) - 1830203..1830967 (-) 765 WP_002883723.1 ABC transporter ATP-binding protein -
  V6U64_RS08400 (V6U64_08400) - 1830970..1831920 (-) 951 WP_002883720.1 branched-chain amino acid ABC transporter permease -
  V6U64_RS08405 (V6U64_08405) - 1831924..1832808 (-) 885 WP_002883743.1 branched-chain amino acid ABC transporter permease -
  V6U64_RS08410 (V6U64_08410) - 1832852..1834027 (-) 1176 WP_048790259.1 ABC transporter substrate-binding protein -
  V6U64_RS08415 (V6U64_08415) - 1834182..1834463 (-) 282 WP_002890011.1 YlbG family protein -
  V6U64_RS08420 (V6U64_08420) - 1834456..1834905 (-) 450 WP_155213028.1 YlbF family regulator -
  V6U64_RS08425 (V6U64_08425) clpP 1834991..1835581 (-) 591 WP_002883818.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V6U64_RS08430 (V6U64_08430) upp 1835755..1836384 (-) 630 WP_002883819.1 uracil phosphoribosyltransferase -
  V6U64_RS08435 (V6U64_08435) - 1836474..1839389 (-) 2916 WP_410536525.1 glycoside hydrolase family 68 protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21533.57 Da        Isoelectric Point: 4.4829

>NTDB_id=940465 V6U64_RS08425 WP_002883818.1 1834991..1835581(-) (clpP) [Streptococcus salivarius strain KSS4]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQ
PIEKVHVDAERDNWMSAQETLEYGFIDEIMANNQLK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=940465 V6U64_RS08425 WP_002883818.1 1834991..1835581(-) (clpP) [Streptococcus salivarius strain KSS4]
ATGATTCCTGTAGTAATTGAACAAACATCACGCGGTGAGCGTTCTTATGATATTTACTCACGTTTGCTCAAGGATCGTAT
CATCATGTTAACAGGTCCTGTTGAAGATAATATGGCAAACTCAATTATCGCCCAACTCTTGTTCTTGGATGCTCAAGACA
ATACAAAAGATATCTATCTTTATGTTAATACACCAGGTGGATCCGTTTCGGCAGGTCTTGCCATTGTTGATACAATGAAC
TTCATCAAGTCTGATGTTCAGACTATCGTTATGGGGATGGCAGCATCTATGGGAACAATTATCGCTTCAAGCGGTACCAA
AGGTAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTGGTACTGGTGGCGGTACGCAACAAA
CAGACATGGCTATCGCAGCTGAACACTTGCTCAAGACACGTAATAACTTGGAGCAAATCTTGGCAGATAATTCTGGACAA
CCAATTGAAAAAGTTCATGTAGACGCTGAACGTGACAATTGGATGAGTGCTCAAGAAACGCTTGAATATGGTTTCATCGA
TGAAATCATGGCTAATAACCAATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

98.98

100

0.99
  clpP Streptococcus thermophilus LMD-9

98.98

100

0.99
  clpP Streptococcus pneumoniae Rx1

93.846

99.49

0.934
  clpP Streptococcus pneumoniae D39

93.846

99.49

0.934
  clpP Streptococcus pneumoniae R6

93.846

99.49

0.934
  clpP Streptococcus pneumoniae TIGR4

93.846

99.49

0.934
  clpP Streptococcus pyogenes JRS4

90.306

100

0.903
  clpP Streptococcus pyogenes MGAS315

90.306

100

0.903
  clpP Streptococcus mutans UA159

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.755

100

0.878
  clpP Lactococcus lactis subsp. cremoris KW2

87.245

100

0.872
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571