Detailed information NTG0940405

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: V6U63_RS09280
• Genome accession: NZ_CP145861
• Coordinates: 1998031..1998459 (-)
• Length: 142 a.a.
• NCBI ID: WP_253183813.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS3
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1993031..2003459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U63_RS09240 (V6U63_09225)	-	1993159..1993605 (-)	447	WP_021144682.1	hypothetical protein	-
V6U63_RS09245 (V6U63_09230)	-	1993683..1994339 (-)	657	WP_410535064.1	CPBP family intramembrane glutamic endopeptidase	-
V6U63_RS09250 (V6U63_09235)	-	1994351..1994548 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
V6U63_RS09255 (V6U63_09240)	-	1994799..1995992 (-)	1194	WP_410535066.1	acetate kinase	-
V6U63_RS09260 (V6U63_09245)	comYH	1996049..1997005 (-)	957	WP_227071975.1	class I SAM-dependent methyltransferase	Machinery gene
V6U63_RS09265 (V6U63_09250)	comGG	1997050..1997367 (-)	318	WP_227071976.1	competence type IV pilus minor pilin ComGG	-
V6U63_RS09270 (V6U63_09255)	comYF	1997345..1997782 (-)	438	WP_227071977.1	competence type IV pilus minor pilin ComGF	Machinery gene
V6U63_RS09275 (V6U63_09260)	comGE	1997769..1997999 (-)	231	WP_021144685.1	competence type IV pilus minor pilin ComGE	-
V6U63_RS09280 (V6U63_09265)	comYD	1998031..1998459 (-)	429	WP_253183813.1	competence type IV pilus minor pilin ComGD	Machinery gene
V6U63_RS09285 (V6U63_09270)	comYC	1998419..1998745 (-)	327	WP_002885815.1	competence type IV pilus major pilin ComGC	Machinery gene
V6U63_RS09290 (V6U63_09275)	comYB	1998742..1999842 (-)	1101	WP_144429890.1	competence type IV pilus assembly protein ComGB	Machinery gene
V6U63_RS09295 (V6U63_09280)	comYA	1999724..2000665 (-)	942	WP_002885658.1	competence type IV pilus ATPase ComGA	Machinery gene
V6U63_RS09300 (V6U63_09285)	-	2000747..2001109 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15713.16 Da
• Isoelectric Point: 10.3019

>NTDB_id=940405 V6U63_RS09280 WP_253183813.1 1998031..1998459(-) (comYD) [Streptococcus salivarius strain KSS3]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLAKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=940405 V6U63_RS09280 WP_253183813.1 1998031..1998459(-) (comYD) [Streptococcus salivarius strain KSS3]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTTTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTATCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAGACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTTGAATTGCAGTTGGCCAAGGAT
AAAATCAGTAACGGAAAATCAAGTCTGGTGATTCCTAAAAATATACATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.143	98.592	0.415
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	41.667	92.958	0.387