Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   V6U63_RS01445 Genome accession   NZ_CP145861
Coordinates   268736..269635 (+) Length   299 a.a.
NCBI ID   WP_247922399.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 263736..274635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS01425 (V6U63_01430) trkA 264901..266250 (-) 1350 WP_014633874.1 Trk system potassium transporter TrkA -
  V6U63_RS01430 (V6U63_01435) - 266528..267037 (+) 510 WP_118172046.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6U63_RS01435 (V6U63_01440) - 267348..267905 (+) 558 WP_037598980.1 ECF transporter S component -
  V6U63_RS01440 (V6U63_01445) - 267908..268558 (+) 651 WP_048673883.1 phosphatase PAP2 family protein -
  V6U63_RS01445 (V6U63_01450) comR 268736..269635 (+) 900 WP_247922399.1 XRE family transcriptional regulator Regulator
  V6U63_RS01450 (V6U63_01455) comA 269810..271906 (+) 2097 WP_272159129.1 peptide cleavage/export ABC transporter Regulator
  V6U63_RS01455 (V6U63_01460) - 272018..272350 (+) 333 WP_014633880.1 DUF805 domain-containing protein -
  V6U63_RS01460 (V6U63_01465) - 272402..273793 (-) 1392 WP_410535181.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35153.68 Da        Isoelectric Point: 5.8538

>NTDB_id=940358 V6U63_RS01445 WP_247922399.1 268736..269635(+) (comR) [Streptococcus salivarius strain KSS3]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMADLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKSKLALIEEVYEKFFELLPEEELLTLDILENILSFTNWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQFDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKKAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=940358 V6U63_RS01445 WP_247922399.1 268736..269635(+) (comR) [Streptococcus salivarius strain KSS3]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGTCAGTTAATTCGTATTGAAAAAGGGGAGTCACTCCCGTCTTTGGATAAATTATCTT
ATATCGCCAAACGTCTAGGAAAAAATATGGCCGATCTATTGGATCATGACAATATTACCATTCCTGACGAATATTATGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAATCCAGAAAGAATAAAGTCTAAACTTGCCTTAATTGAGGAAGT
CTATGAGAAATTCTTTGAACTTCTTCCAGAAGAAGAGTTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
ATTGGGAGGAGAGCCCAAAGGTTGAAGAAATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTCTATGGAAGAAAACAGTTTGACAAAAAACTTTTTGAAAGGAT
TGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTCTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTTTCAGACTTCTTAACAGTTGTGGATAAAGCATTAGCCGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCTAAATATGAACTTCTGCATAAGGGAAATAAGAAAAAGGC
TGCAGAGAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAAGAAAGTATAAAAGCAGGGA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

97.659

100

0.977
  comR Streptococcus salivarius SK126

96.99

100

0.97
  comR Streptococcus thermophilus LMG 18311

94.314

100

0.943
  comR Streptococcus thermophilus LMD-9

93.645

100

0.936
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421