NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	V6U62_RS08345	Genome accession	NZ_CP145860
Coordinates	1816971..1817561 (-)	Length	196 a.a.
NCBI ID	WP_002883818.1	Uniprot ID	A0AB33ZFD4
Organism	Streptococcus salivarius strain KSS2
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1811971..1822561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U62_RS08315 (V6U62_08295)	-	1812183..1812947 (-)	765	WP_002883723.1	ABC transporter ATP-binding protein	-
V6U62_RS08320 (V6U62_08300)	-	1812950..1813900 (-)	951	WP_195914705.1	branched-chain amino acid ABC transporter permease	-
V6U62_RS08325 (V6U62_08305)	-	1813904..1814788 (-)	885	WP_002890014.1	branched-chain amino acid ABC transporter permease	-
V6U62_RS08330 (V6U62_08310)	-	1814832..1816007 (-)	1176	WP_195914706.1	ABC transporter substrate-binding protein	-
V6U62_RS08335 (V6U62_08315)	-	1816162..1816443 (-)	282	WP_022496203.1	DUF2129 domain-containing protein	-
V6U62_RS08340 (V6U62_08320)	-	1816436..1816885 (-)	450	WP_022496204.1	YlbF family regulator	-
V6U62_RS08345 (V6U62_08325)	clpP	1816971..1817561 (-)	591	WP_002883818.1	ATP-dependent Clp protease proteolytic subunit	Regulator
V6U62_RS08350 (V6U62_08330)	upp	1817735..1818364 (-)	630	WP_002883819.1	uracil phosphoribosyltransferase	-
V6U62_RS08355 (V6U62_08335)	-	1818454..1821369 (-)	2916	WP_410535193.1	glycoside hydrolase family 68 protein	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21533.57 Da Isoelectric Point: 4.4829

                                >NTDB_id=940331 V6U62_RS08345 WP_002883818.1 1816971..1817561(-) (clpP) [Streptococcus salivarius strain KSS2]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQ

PIEKVHVDAERDNWMSAQETLEYGFIDEIMANNQLK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=940331 V6U62_RS08345 WP_002883818.1 1816971..1817561(-) (clpP) [Streptococcus salivarius strain KSS2]

ATGATTCCTGTAGTAATTGAACAAACATCACGCGGTGAGCGTTCTTACGATATTTACTCACGTTTGCTCAAGGATCGTAT

CATCATGTTAACAGGTCCTGTTGAAGATAATATGGCAAACTCAATTATCGCCCAACTCTTGTTCTTGGATGCTCAAGACA

ATACAAAAGATATCTATCTTTATGTTAATACACCAGGTGGATCCGTTTCGGCAGGTCTTGCCATTGTTGATACAATGAAC

TTCATCAAGTCTGATGTTCAGACTATCGTTATGGGGATGGCAGCATCTATGGGAACAATTATCGCTTCAAGCGGTACCAA

AGGTAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAACCGATGGGTGGTACTGGTGGTGGTACGCAACAAA

CAGACATGGCTATCGCAGCTGAACATTTGCTCAAAACGCGTAATAACTTGGAGCAAATCTTGGCGGATAATTCTGGACAG

CCAATTGAAAAAGTTCATGTAGACGCTGAACGTGACAATTGGATGAGTGCCCAAGAAACGCTTGAATATGGCTTTATCGA

TGAAATCATGGCTAATAACCAATTAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus thermophilus LMG 18311	98.98	100	0.99
clpP	Streptococcus thermophilus LMD-9	98.98	100	0.99
clpP	Streptococcus pneumoniae Rx1	93.846	99.49	0.934
clpP	Streptococcus pneumoniae D39	93.846	99.49	0.934
clpP	Streptococcus pneumoniae R6	93.846	99.49	0.934
clpP	Streptococcus pneumoniae TIGR4	93.846	99.49	0.934
clpP	Streptococcus pyogenes JRS4	90.306	100	0.903
clpP	Streptococcus pyogenes MGAS315	90.306	100	0.903
clpP	Streptococcus mutans UA159	88.265	100	0.883
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.755	100	0.878
clpP	Lactococcus lactis subsp. cremoris KW2	87.245	100	0.872
clpP	Bacillus subtilis subsp. subtilis str. 168	58.163	100	0.582
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.031	98.469	0.571

Detailed information NTG0940331