Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U62_RS02925 Genome accession   NZ_CP145860
Coordinates   558109..560079 (+) Length   656 a.a.
NCBI ID   WP_155123796.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 553109..565079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS02910 (V6U62_02900) - 553826..554722 (+) 897 WP_022496734.1 RluA family pseudouridine synthase -
  V6U62_RS02915 (V6U62_02905) pta 554738..555721 (+) 984 WP_037603038.1 phosphate acetyltransferase -
  V6U62_RS02920 (V6U62_02910) amiA 555957..557927 (+) 1971 WP_037611823.1 peptide ABC transporter substrate-binding protein Regulator
  V6U62_RS02925 (V6U62_02915) amiA 558109..560079 (+) 1971 WP_155123796.1 peptide ABC transporter substrate-binding protein Regulator
  V6U62_RS02930 (V6U62_02920) amiC 560140..561633 (+) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U62_RS02935 (V6U62_02925) amiD 561633..562559 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U62_RS02940 (V6U62_02930) amiE 562569..563654 (+) 1086 WP_349955229.1 ABC transporter ATP-binding protein Regulator
  V6U62_RS02945 (V6U62_02935) amiF 563647..564576 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72921.33 Da        Isoelectric Point: 5.2858

>NTDB_id=940303 V6U62_RS02925 WP_155123796.1 558109..560079(+) (amiA) [Streptococcus salivarius strain KSS2]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMASYGDEWSGINL
KDSQDGIFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVENAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940303 V6U62_RS02925 WP_155123796.1 558109..560079(+) (amiA) [Streptococcus salivarius strain KSS2]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAAACATTGGACTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAATGATAAATATGGTAACTTGGTACCTGCTATTGCC
AAGGATTGGACTGTTTCGGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCGGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAATTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTACGATGCTTCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGCCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCTGCACAACTTAATGGTGAAAAAGGTGCAGCCCTTGCTGTTCGTAACCTTCTCGTGAAACCTGATTTTGTTT
ATGCTGGTGATAAGTCATTCGGTGATTTGGTAACTGAAAAGATGGCTTCATATGGCGATGAATGGTCAGGTATTAACCTT
AAAGACAGTCAAGATGGTATCTTCAACGCTGATAAGGCTAAGACTGAATTTAACAAGGCTAAGGAAGCCCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTCGGTAAAGAAAATGTGGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCACCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGAAAATGCAGCTAAGGAAACAAGCGACCTCAAT
GTGCGTTATGAACGTTATGCAGAAGCACAAGCATGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTAAATAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCCTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTCGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

74.848

100

0.748
  amiA3 Streptococcus thermophilus LMG 18311

74.734

100

0.748
  amiA3 Streptococcus thermophilus LMD-9

74.734

100

0.748