Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   V6U62_RS02930 Genome accession   NZ_CP145860
Coordinates   560140..561633 (+) Length   497 a.a.
NCBI ID   WP_022496730.1    Uniprot ID   A0AB33Z9R9
Organism   Streptococcus salivarius strain KSS2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 555140..566633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS02920 (V6U62_02910) amiA 555957..557927 (+) 1971 WP_037611823.1 peptide ABC transporter substrate-binding protein Regulator
  V6U62_RS02925 (V6U62_02915) amiA 558109..560079 (+) 1971 WP_155123796.1 peptide ABC transporter substrate-binding protein Regulator
  V6U62_RS02930 (V6U62_02920) amiC 560140..561633 (+) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U62_RS02935 (V6U62_02925) amiD 561633..562559 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U62_RS02940 (V6U62_02930) amiE 562569..563654 (+) 1086 WP_349955229.1 ABC transporter ATP-binding protein Regulator
  V6U62_RS02945 (V6U62_02935) amiF 563647..564576 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator
  V6U62_RS02950 (V6U62_02940) - 564627..565412 (-) 786 WP_195914590.1 ABC transporter permease -
  V6U62_RS02955 (V6U62_02945) - 565424..566122 (-) 699 WP_118058083.1 ABC transporter ATP-binding protein -
  V6U62_RS02960 (V6U62_02950) - 566127..566504 (-) 378 WP_002884206.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55890.70 Da        Isoelectric Point: 10.0616

>NTDB_id=940304 V6U62_RS02930 WP_022496730.1 560140..561633(+) (amiC) [Streptococcus salivarius strain KSS2]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIEYYDTKELQEKAS
SVDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYAHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGDDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGIL
TFLLSLPTIALVYIIRLIGSKIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=940304 V6U62_RS02930 WP_022496730.1 560140..561633(+) (amiC) [Streptococcus salivarius strain KSS2]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCCGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTATATCGAGTACTACGACACCAAAGAGTTGCAGGAGAAAGCTAGC
TCAGTTGACAAGTCGGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGCAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GTTTCTATGCACACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGAACTAAGCATAAATACTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACCTATGCTGAGCAGGGTGTTC
TTGATGTTATTACACAAGGACAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAAGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGGGATCGTTCTTACTATGGTGATGACCCTTACAC
AGCTACTAAGAGTCGCTACCAGTACCCATCAATGGTGACAAGTTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTGTCAACTGGTATCTTG
ACTTTCTTGCTCTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTAAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTAATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTCCGTTTTGCACGCGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCAGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTTACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.793

100

0.988
  amiC Streptococcus thermophilus LMG 18311

96.982

100

0.97
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966