Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U62_RS02920 Genome accession   NZ_CP145860
Coordinates   555957..557927 (+) Length   656 a.a.
NCBI ID   WP_037611823.1    Uniprot ID   A0AB33ZAL0
Organism   Streptococcus salivarius strain KSS2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 550957..562927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS02895 (V6U62_02885) - 551676..552251 (-) 576 WP_022496737.1 CYTH domain-containing protein -
  V6U62_RS02900 (V6U62_02890) - 552347..553021 (+) 675 WP_410534928.1 GTP pyrophosphokinase family protein -
  V6U62_RS02905 (V6U62_02895) - 552993..553829 (+) 837 WP_195914586.1 NAD kinase -
  V6U62_RS02910 (V6U62_02900) - 553826..554722 (+) 897 WP_022496734.1 RluA family pseudouridine synthase -
  V6U62_RS02915 (V6U62_02905) pta 554738..555721 (+) 984 WP_037603038.1 phosphate acetyltransferase -
  V6U62_RS02920 (V6U62_02910) amiA 555957..557927 (+) 1971 WP_037611823.1 peptide ABC transporter substrate-binding protein Regulator
  V6U62_RS02925 (V6U62_02915) amiA 558109..560079 (+) 1971 WP_155123796.1 peptide ABC transporter substrate-binding protein Regulator
  V6U62_RS02930 (V6U62_02920) amiC 560140..561633 (+) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U62_RS02935 (V6U62_02925) amiD 561633..562559 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71984.79 Da        Isoelectric Point: 4.9178

>NTDB_id=940302 V6U62_RS02920 WP_037611823.1 555957..557927(+) (amiA) [Streptococcus salivarius strain KSS2]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYVYNSDPESLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGIKWYTSDGEEYADVTAKDFVTGLKHAADGKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEALERGFTDGAYSLARVYPTSSNYSSVEKKYKDNIYYTAPGASTSAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQMNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
TDGQDGLYNAEKAKTEFAKAKEALQGEGVQFPIHLDLPVDQSSKIHVAQAQSLKQTIEQSLGSDNVVIDVNQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940302 V6U62_RS02920 WP_037611823.1 555957..557927(+) (amiA) [Streptococcus salivarius strain KSS2]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGATCCAGAATCATTGGATTACATCACTTCAAATACAGGAC
CTACTAAGACAGCTGTGACAAACGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTCCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGAATTAAATGGTATACTTCTGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAGTCTGGAGCTCTTT
ACTTGGTGCAAGATTCTATTGCTGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGCGTTAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCTGAGCCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCCTTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAG
AATGTACACTTTGATGCCATCAAATTGTCATATTATGACGGTTCGGATCAAGAGGCTCTAGAACGTGGTTTCACGGATGG
TGCCTATAGTTTGGCTCGTGTCTACCCAACGAGTTCTAACTATTCTTCTGTAGAGAAGAAATATAAAGATAACATTTATT
ACACTGCACCAGGTGCGTCTACATCAGCCATTGGTGTTAATATCGACCGCCAAAGCTATAAATTCTCAGCCAAGAAGACG
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCAATTGATCGTAC
GGCTTATCAATCACAAATGAATGGTAAAGATGGTGCAGCTCTAGCTCTTCGTAACCTTTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGAGATCTTGTAACAGAGAAAATGTCCTCTTATGGTGATGAATGGTCAGGTGTCAACTTT
ACTGATGGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGAAGCTCTCCAAGGAGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAAGTTCTAAAATCCATGTTGCTCAGGCCCAATCTTTGA
AACAAACCATTGAACAATCATTGGGTAGCGATAATGTGGTTATCGATGTTAACCAATTGTCATCAGATGATATGCAAAAT
GCAACCCTTAATGCGGCAAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCTCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGCTATGCCCAAGCTCAAGCATGGTTGGAAGATAGCTCGCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATACGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

98.628

100

0.986
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904